Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq5054 419 7e-113 >seq5054 Length=5139 Score = 419 bits (464), Expect = 7e-113 Identities = 519/703 (74%), Gaps = 8/703 (1%) Strand=Plus/Plus Query 19514 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 19573 ||| | ||||| || | |||||| | || | || ||||| || | | |||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 19574 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGA 19632 ||||| ||| | || || ||| | ||||| || || ||||| || ||||| ||||| || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 19633 CATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATC 19692 ||| ||||| ||||| ||||| || || ||| |||||||| || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 19693 GGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 19752 || || || || || | || || ||||| || ||||||||||||||||||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 19753 TAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTT 19812 | ||| | || |||||| | || ||||| || || | |||||| | || | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 19813 CCTCATTGGCATCTATGCT--TACATGGGACGAGAGTGGGAACTTAGCTATC-GACTAGG 19869 ||| | || | |||||| |||||||| || || |||||| ||| | || | |||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAA-TTATCGTTCCGTTTAGG 1200 Query 19870 AATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTT 19929 ||| | || ||||| |||||| ||||| ||||| || || || || || || || || Sbjct 1201 TATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATT 1260 Query 19930 TCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGG 19989 | || ||||| | || || ||| ||||| || | |||||| || ||||| || || Sbjct 1261 CTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGG 1320 Query 19990 TACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 20049 ||| || |||| |||| | ||||||||||| || || ||||| || |||||||||||||| Sbjct 1321 TACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCA 1380 Query 20050 CATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCT 20109 |||| | ||||| ||||||||||| ||||| ||| ||||| ||| ||||||||||| | Sbjct 1381 CATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATT 1440 Query 20110 TGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAA 20169 ||||| || || | | ||||| || |||||| | ||| | ||| |||||| Sbjct 1441 AGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCG 1500 Query 20170 GTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCAT 20212 || || |||||||||||||| || ||||| ||||| |||||| Sbjct 1501 TTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 125 bits (138), Expect = 2e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 20213 GGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACAC 20272 ||||||||||| ||| | ||||||||||||||||| |||||||| ||||| ||||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 20273 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 20332 |||||| | ||||| |||||||| | || ||||||||| |||| || || | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 20333 ATGGCGTTTAATCTGAACGGTTTC 20356 ||||| || || | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148810880919462