Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq5054 403 5e-108 >seq5054 Length=5139 Score = 403 bits (446), Expect = 5e-108 Identities = 515/702 (73%), Gaps = 8/702 (1%) Strand=Plus/Plus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||| | ||||| || | |||||| | || | || ||||| || | | |||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 28702 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 ||||| ||| | || || ||| | ||||| || || ||||| || || || ||||| || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 ||| ||||| ||||| ||||| || | || |||||| || || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 28821 GGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 28880 || || || ||||| | || || ||||| || ||||||||||||||||||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 28881 TAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTT 28940 | ||| | || |||||| | || ||||| || || | |||||| | || | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 28941 CCTCATTGGCGTCTATGCT--TACATGGGACGCGAGTGGGAACTTAGC-TATCGACTAGG 28997 ||| || || |||||| |||||||| || || |||||| ||| | | || |||| Sbjct 1144 CCT--TTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAA-TTATCGTTCCGTTTAGG 1200 Query 28998 AATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTT 29057 ||| | || ||||| ||| || ||||||||||| || || || || || || || || Sbjct 1201 TATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATT 1260 Query 29058 CCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGG 29117 | | || |||||| |||| |||||||| || |||| ||||| || ||||||||||| Sbjct 1261 CTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGG 1320 Query 29118 CACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 29177 || || |||| |||| | || |||||||| || || ||||| || |||||||||||||| Sbjct 1321 TACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCA 1380 Query 29178 CATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCT 29237 |||| | || |||||||| || || ||||| || |||| ||| ||||||||||| | Sbjct 1381 CATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATT 1440 Query 29238 TGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAA 29297 || || || || | | ||||| || |||||| || ||| ||| |||||| Sbjct 1441 AGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCG 1500 Query 29298 GTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCA 29339 || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 1501 TTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 114 bits (126), Expect = 4e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 ||||||||||| ||| | ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 |||||| | ||||| |||||||| | || ||||||||| |||| || || | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 29461 ATGGCGTTTAATCTGAACGGTTT 29483 ||||| || || | |||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTT 3771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146647941370094