Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq5054 446 5e-121 >seq5054 Length=5139 Score = 446 bits (494), Expect = 5e-121 Identities = 531/713 (74%), Gaps = 8/713 (1%) Strand=Plus/Plus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 |||||||| ||| | || || || |||||| | || ||||| ||||| || | | Sbjct 835 TTTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 894 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 |||||||| ||||| ||| | || || || || ||||| || || ||||| ||||| | Sbjct 895 CATGATTCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 953 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 | || |||||||| ||||| ||||| || || ||| |||| ||||||||| || |||| Sbjct 954 CGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACA 1013 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAA 18961 |||| || || || || || || || | || || ||||| || ||||||||||||| Sbjct 1014 ACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAA 1073 Query 18962 TTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGG 19021 ||||||||||| ||| | || |||||| | || ||||| || || | |||||| | | Sbjct 1074 TTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCG 1133 Query 19022 TCTTCCACTTCCTCATTGGCGTCTATGCT--TACATGGGACGCGAGTGGGAACTTAGC-T 19078 | | ||||||||| || || |||||| |||||||| || || |||||| ||| | | Sbjct 1134 TTTGCCACTTCCT--TTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAA-TTATCGT 1190 Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138 || |||| ||||| || ||||| |||||| ||||||||||| || || || || | Sbjct 1191 TCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTT 1250 Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 | || || ||| | || || ||| | || |||||||| || |||| |||||| || | Sbjct 1251 CAGCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAG 1310 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 ||||| ||||| || |||| |||| | |||||||| ||||| || |||||||| |||| Sbjct 1311 GTATTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGC 1370 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 |||||||||||||| | ||||| |||||||| || || || ||| |||| ||| |||| Sbjct 1371 ACCCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGC 1430 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||||| | ||||| || || | | |||||||| |||||| | | |||| ||| Sbjct 1431 ACGGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACG 1490 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCAT 19431 || ||| || || ||||||||||||||||| |||||||| ||||||||| Sbjct 1491 CAGGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 91.5 bits (100), Expect = 4e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19432 GGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACAT 19491 || || |||||||| || || ||||| ||||| || |||||||| ||||| |||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 19492 TTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACC 19551 ||||| || ||||||||||| || | || |||||||| | || | || || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 19552 ATGGCATTCAACTTGAATGGCTT 19574 |||||||||||||| || || || Sbjct 3749 ATGGCATTCAACTTAAACGGTTT 3771 Score = 84.2 bits (92), Expect = 6e-12 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 19576 AACTTTAACCAGTCCCTTCTTGACA-ACAATGGTCGTGTCATTGATACTTGGGCTGACAT 19634 ||||| ||||| || | | ||| |||| |||||||| | | |||||||| ||||| Sbjct 4952 AACTTCAACCAATCAGTAGTAGACTCACAA-GGTCGTGTATTAAACACTTGGGCGGACAT 5010 Query 19635 TCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCC 19694 |||| ||||||||| | || | || ||||||||||| ||||| ||||| |||||||| Sbjct 5011 CATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCC 5070 Query 19695 ACTTGATTTGGCT 19707 | || || ||| Sbjct 5071 GTTAGACTTAGCT 5083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141131805596262