Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq5054 558 4e-154 seq4579 269 3e-67 >seq5054 Length=5139 Score = 558 bits (618), Expect = 4e-154 Identities = 552/704 (78%), Gaps = 10/704 (1%) Strand=Plus/Plus Query 157685 TGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCT 157744 ||| | || ||||| | |||||||| || | ||||||||||||||| | |||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCC- 903 Query 157745 ACGT-TGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGG 157802 | || | ||| ||||||| ||| || |||||| |||| ||| |||||||||| || || | Sbjct 904 ATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAG 962 Query 157803 ACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCT 157862 |||| || || ||||| ||||||||| | ||||| || | || ||||||||||| || | Sbjct 963 ACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTT 1022 Query 157863 CTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAG 157922 | ||||| ||||| || | ||| ||||| |||||||| ||||||||||| || ||||||| Sbjct 1023 CAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAG 1082 Query 157923 CAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACT 157982 | || ||| | ||||| ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1083 CTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACT 1142 Query 157983 TCCTGATCGGCATCTATGC--CTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGG 158040 |||| | || | ||||| ||| ||||| ||||| |||||| | || | ||||||||| Sbjct 1143 TCCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGG 1200 Query 158041 TATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATT 158100 |||||| ||||||||| ||| || || || |||||||| ||||| || || ||||| Sbjct 1201 TATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATT 1260 Query 158101 CCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGG 158160 | |||| || || |||| |||||||| ||||| || | |||||| | ||||| || || Sbjct 1261 CTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGG 1320 Query 158161 TACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCA 158220 ||| ||||||| |||| | ||||||||||| || |||||||||||||||||||||||||| Sbjct 1321 TACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCA 1380 Query 158221 TATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCT 158280 ||| | ||||||||||| ||||| ||||| || | |||||||||||||| || | Sbjct 1381 CATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATT 1440 Query 158281 CGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTC-ACAGAACTACGGTTATA 158339 |||||||| || | | |||||||| ||||||| || || ||| ||| ||||| Sbjct 1441 AGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACC 1499 Query 158340 AGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCAT 158383 |||||||||||||||||||| |||||||| || || || ||| Sbjct 1500 GTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 147 bits (162), Expect = 3e-30 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 158384 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 158443 || ||||| |||||| | ||||||||||||||||||||||||||||| ||||| || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 158444 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC 158503 |||||| | ||||| ||||| || |||| || |||||||| || | || | ||||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 158504 ATGGCATTCAACCTGAACGGTTTC 158527 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 158526 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 158585 ||||||||||||| || | | || || |||||||| || ||||| ||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 158586 TACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158645 | | ||||| ||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 158646 C 158646 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 269 bits (298), Expect = 3e-67 Identities = 360/498 (72%), Gaps = 2/498 (0%) Strand=Plus/Minus Query 159376 TGGTTTGATG-TCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTC 159434 |||||||||| | ||| ||||||||||| | ||| || || || || || |||||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 159435 TGGACTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGAC 159494 || | ||||| | || ||||||| | || | || || ||| ||||||| || || Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 159495 TTTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTT 159554 |||| | || ||||| || || ||| | |||| ||| ||| | |||||| ||| || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 159555 TCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 159614 | || ||||| || ||||| || || | | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 159615 GGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTT 159674 ||||||||| ||||||| || ||| ||| ||||| || ||||| || | ||| | || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 159675 TGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGC 159734 | |||| | ||||||||||| | | | || ||||| ||||| || || ||||||||||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 159735 TCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT 159794 |||| ||| | ||||| || || |||||||| ||||| | ||| ||||||||||| Sbjct 3755 TCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTT 3696 Query 159795 TGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTT 159854 || ||||| || |||||| | ||||| || ||||||||||| || || || Sbjct 3695 CACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTT 3636 Query 159855 CGGGGTAGCAGCAATCTT 159872 || || ||||||||||| Sbjct 3635 TGGTGTTGCAGCAATCTT 3618 Score = 259 bits (286), Expect = 6e-64 Identities = 250/321 (78%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 160078 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTT 160137 ||||||||||| |||||||| || ||||| ||||| || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 160138 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATT 160197 || || |||||||| || || ||||||| |||||||||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 160198 GGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAA 160257 ||| | || | ||| | |||||||| || ||||| ||| |||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 160258 GATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCT 160317 || ||||||||||| || |||||||| || ||| | |||| |||||||| |||||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 160318 TGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCT 160377 |||||||| | || |||||||||||| ||| | |||||||| |||||| ||||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 160378 AGAGGTAACGCACTGTGATTA 160398 | |||||||| || | |||| Sbjct 426 CGTGGTAACGCTCTATAATTA 406 Score = 138 bits (152), Expect = 1e-27 Identities = 149/197 (76%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 159880 CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTT 159939 ||||| |||| | ||||| || |||||||| | ||||| ||||| |||||||| ||| Sbjct 2139 CTGTTTTTCC---AAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTT 2083 Query 159940 GCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACA 159999 |||||| | |||||| || | || ||||| || || |||||||||||||| |||||| Sbjct 2082 GCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACA 2023 Query 160000 TTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAA 160059 || ||||||||||| || || ||||| || || || | ||||| || | ||| Sbjct 2022 TTATTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAA 1963 Query 160060 GAGACTTATTCTATGGT 160076 || || ||||||||||| Sbjct 1962 GAAACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572951376370800