Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq5054 531 6e-146 seq4579 230 3e-55 >seq5054 Length=5139 Score = 531 bits (588), Expect = 6e-146 Identities = 544/703 (77%), Gaps = 8/703 (1%) Strand=Plus/Plus Query 159969 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 160028 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 160029 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 160087 ||| | | |||| |||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 160088 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 160147 |||||| || ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 160148 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 160207 ||||| ||||| ||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 160208 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTT 160267 || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 160268 CCTTATCGGCATCTATGC--ATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGT 160325 |||| | || | ||||| || ||||| ||||| |||||| | || | |||||||||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 160326 ATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 160385 ||||| || |||||| ||| || || || |||||||| ||||| || || ||||||||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 160386 CTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 160445 | || || || |||| |||||||| ||||| || | |||||| | ||||| || ||| Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 160446 ACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 160505 || ||||||| |||| | ||||||||||| || ||||| ||||||||||| ||||||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 160506 ATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTC 160565 ||| | || |||||||| ||||| ||||| || || ||||||||||||||||| | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 160566 GTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTC-ACAGAACTACGGTTATAA 160624 |||||||| || | | |||||||| ||||||| || || ||| ||| ||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCG 1500 Query 160625 GTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCAT 160667 ||||||||||| |||||||| |||||||| || || || ||| Sbjct 1501 TTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 147 bits (162), Expect = 2e-30 Identities = 121/145 (83%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 160668 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCAC 160727 |||||||| |||||| | ||||||||||| || |||||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 160728 TTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGC-AC 160786 |||||| | || || ||||| ||| |||| || |||||||||||| | ||| ||| | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 3747 Query 160787 CATGGCATTCAACCTCAACGGTTTC 160811 |||||||||||| | ||||||||| Sbjct 3748 TATGGCATTCAACTTAAACGGTTTC 3772 Score = 102 bits (112), Expect = 9e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 160810 TCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACG 160869 ||||||||||||| || | | || |||||||||||| | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 160870 TACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 160929 | | || |||||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 160930 CACTCGACCTCGCTGCTGCTGAGTCAACT 160958 | | ||| | ||| || || | ||| || Sbjct 5070 CGTTAGACTTAGCTTCTTCTAACTCAGCT 5098 >seq4579 Length=6132 Score = 230 bits (254), Expect = 3e-55 Identities = 354/502 (71%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 161685 TGGTTTGAC-ATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTC 161743 |||||||| || || || ||||||||| | || |||||||| || || || ||||| Sbjct 4114 TGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 161744 TGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAAC 161803 || | | ||| | || ||||||| |||| | || || ||| ||||||| ||||| Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 161804 TTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTT 161863 ||| | || |||||||| |||||| | |||| ||| || | || ||| ||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 161864 TCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTG 161923 | || || | ||| || ||| || || | | | ||| |||||||| || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 161924 GGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTT 161983 ||||||||| |||||||| |||||| || ||| || ||||| || | ||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 161984 TGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGC 162043 | | ||| | || ||||| || | ||||||| |||||||| |||||||||||| | || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 162044 ACGTCTTATTGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 162099 ||| | ||| | ||||| || || |||||||| ||||| | ||| ||||||| Sbjct 3755 TCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 162100 TTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGT 162159 |||| || ||||| || || ||||| ||||| || ||||||| || ||||| Sbjct 3699 TTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAA 3640 Query 162160 CCTTTGGGGTGGCAGCAATCTT 162181 |||||| || ||||||||||| Sbjct 3639 GCTTTGGTGTTGCAGCAATCTT 3618 Score = 210 bits (232), Expect = 2e-49 Identities = 238/319 (75%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 162387 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTT 162446 ||||||||||| |||||||| || ||||| ||| | || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 162447 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATT 162506 || || |||||||| || || ||||||| |||||||||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 162507 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 162566 ||| | || | ||| | |||||||| || ||||| ||| ||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 162567 GATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCA 162626 || ||||| |||||||| |||||||| || ||| || | | |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 162627 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCT 162686 ||| | || | |||||||| ||||| ||| | ||||| |||||||| | ||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 162687 AGAGGCAACGCCCTTTAAT 162705 | || ||||| || |||| Sbjct 426 CGTGGTAACGCTCTATAAT 408 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 162193 TGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTG 162252 ||||| | ||||| || ||||||||||| | ||||| ||||| |||||||| ||||||| Sbjct 2138 TGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTG 2079 Query 162253 GTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTAT 162312 || | |||||| || | ||| |||||||||||| | || || ||||| ||||||| Sbjct 2078 GTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2019 Query 162313 ACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGA 162372 || ||||| || || ||||| || || || | | ||||||| ||||| | Sbjct 2018 TTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAA 1959 Query 162373 CTTATTCTATGGT 162385 | ||||||||||| Sbjct 1958 CATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559433089861800