Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq5054 553 2e-152 seq4579 208 9e-49 >seq5054 Length=5139 Score = 553 bits (612), Expect = 2e-152 Identities = 548/702 (78%), Gaps = 8/702 (1%) Strand=Plus/Plus Query 180990 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 181049 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 181050 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 181108 ||| | | ||||| ||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 181109 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 181168 |||||| || ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 181169 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 181228 ||||| ||||| ||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 181229 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTT 181288 || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 181289 CCTTATCGGCATTTATGC--ATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGT 181346 |||| | || | ||||| |||||||| |||||||||||| | || | ||| |||||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 181347 ATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTC 181406 ||||| || |||||| |||||| ||||| |||||||| || || || || ||||||||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 181407 CTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGT 181466 |||| || || |||| |||||||| ||||| |||| |||||| | || || || ||| Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 181467 ACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCAC 181526 ||||| |||| |||| | || |||||||| ||||||||||| || ||||| || |||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 181527 ATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTG 181586 ||||| ||||| || |||||||||||||||||| | ||| ||| ||||||||||| || Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 181587 GTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTC-ACAGAACTATGGTTACAA 181645 ||||| || || | ||||||| || ||||||| || || ||| ||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCG 1500 Query 181646 GTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCA 181687 ||||| |||||||||||||| |||||||| || || || || Sbjct 1501 TTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 120 bits (132), Expect = 4e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 181689 GGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 181748 |||||||||||||| | ||||||||||| ||||||||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 181749 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 181808 |||||| | || || ||||| ||| | || || |||||||| || | || || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 181809 ATGGCATTTAACCTCAATGGATTC 181832 |||||||| ||| | || || ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 181831 TCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACG 181890 ||||||||||||| || | | ||| |||||| ||||| | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 181891 TGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCC 181950 | |||||||||| | || |||||||| ||||||||||| ||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 181951 CG 181952 || Sbjct 5070 CG 5071 >seq4579 Length=6132 Score = 208 bits (230), Expect = 9e-49 Identities = 353/506 (70%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 182358 TGGTTCGATG-TCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTC 182416 ||||| |||| | ||| | |||||| || | || || || || || || |||||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 182417 TGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGC 182476 || | ||||| | || ||||||| |||| | || || ||| ||||||| ||| | Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 182477 TTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTT 182536 ||||||||| ||||| || || ||| | ||| |||| || | |||||| |||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 182537 TCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 182596 | || ||||| || || || || || | | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 182597 GGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTT 182656 ||||||||| |||| || ||||| || ||||| || ||||| || | ||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 182657 CGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGC 182716 | || | |||||||| || | | | ||||||||||||||| | || |||||| |||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 182717 TCGCCTGATTGGA-ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTAT 182775 ||| | | | | | | || || || || |||||||| || | ||| |||||||| | Sbjct 3755 TCG-TTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTT 3697 Query 182776 TCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCT 182835 || ||| ||||| || ||||| || || || || |||||| || || || || Sbjct 3696 TCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCT 3637 Query 182836 TTGGTGTCGCGGCGATCTTCAGGTTC 182861 ||||||| || || |||||| | ||| Sbjct 3636 TTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 192 bits (212), Expect = 7e-44 Identities = 231/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 183060 ACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTG 183119 || || || ||||| |||||||||||||| || || || || || || |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 183120 CACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATT 183179 |||||||| ||||| || |||||||| | ||||| ||| | ||| ||||||| || | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 183180 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAA 183239 || | || | || | ||||||||||| || || |||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 183240 GATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCT 183299 || ||||| || || || |||||||| || ||| | | | |||||||| | |||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 183300 TGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCT 183359 ||| |||| | || |||||||||||| || | |||||||||||||| ||||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 183360 AGAGGTAACGCACT 183373 | |||||||| || Sbjct 426 CGTGGTAACGCTCT 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614539704901920