Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq5054 553 2e-152 seq4579 224 1e-53 >seq5054 Length=5139 Score = 553 bits (612), Expect = 2e-152 Identities = 557/719 (77%), Gaps = 4/719 (1%) Strand=Plus/Plus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || |||||| | ||| | || ||||| | || ||| | ||| ||||||||||| Sbjct 827 TGGGCTCGTTTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 886 Query 174519 GGTGTTCTAATGATTCC-TACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGT 174577 ||||| | |||||||| | || ||| | ||||| | ||||| ||||||||| | Sbjct 887 GGTGTAATCATGATTCCATGTCTTCTTA-CTGCAACATCAGTATTCATCATCGCTTTCAT 945 Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637 | |||||| ||||| |||||||| || |||||||||||||| | ||||| || | || Sbjct 946 CGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTA 1005 Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697 || |||||||| || || ||||| ||||| || | ||| ||||| |||||||| ||||| Sbjct 1006 CGGTAACAACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTT 1065 Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757 ||||||||| |||||||| || | | ||||||||| | || ||||||||||||| ||| Sbjct 1066 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCA 1125 Query 174758 ACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 |||| | || | |||||||||| | ||| | | | ||| ||||| ||||| |||||| | Sbjct 1126 ACTAATCGTTTGCCACTTCCTTTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAATT 1185 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 || | |||||||||||| | || |||||| ||| || ||||| || ||||| || || Sbjct 1186 ATCGTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGC 1245 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 |||||||| |||||| |||| || || |||| ||||||||||||||||||| ||||| Sbjct 1246 TGCTTCAGCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCC 1305 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || ||||| || || ||||| |||| |||| | || |||||||| || || |||||| | Sbjct 1306 ATTAGGTATTTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCT 1365 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGC 175057 |||||||| ||||||||||| || || || ||||| || ||||||||||| ||||| || Sbjct 1366 TATGCACCCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGC 1425 Query 175058 GATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTC-AC 175116 ||||| |||||| | ||||| || || | ||||||| |||||||||| || || || Sbjct 1426 TATGCACGGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTAC 1485 Query 175117 AGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCAT 175175 | ||| |||||| ||||| |||||||||||||| || ||||| || || || ||| Sbjct 1486 A-AACGCAGGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 143 bits (158), Expect = 4e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 175176 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCAC 175235 || ||||| |||||| | ||||||||||||||||||||||||||||| || ||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 175236 TTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACA 175295 ||||||||||| || ||||| || | ||||| |||||||| || | ||| | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 175296 ATGGCATTCAACCTCAATGGTTTC 175319 |||||||||||| | || |||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 175318 TCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATG 175377 ||||||||||||| || || | ||| ||||||| | ||||| ||||| |||||||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 175378 TTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCC 175437 | | ||| | ||| | || |||||||||||||| ||| | || || |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 175438 CACTAGATTTGGC 175450 | |||| || || Sbjct 5070 CGTTAGACTTAGC 5082 >seq4579 Length=6132 Score = 224 bits (248), Expect = 1e-53 Identities = 345/487 (71%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 175863 GAAGACTGGCTTC-TCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCT 175921 || |||||||||| ||| ||| | || | || | || ||||| || ||| ||||| | Sbjct 4099 GATGACTGGCTTCGTCA-AGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTTTT 4041 Query 175922 TCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTG 175981 || ||||||| |||| | || |||||| ||||||| ||||||||||| || || Sbjct 4040 CCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACTTTTGTTACATCATG 3981 Query 175982 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGT 176041 ||| || |||||| | ||| |||| || | || ||| |||||| | || || || || Sbjct 3980 GTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCGGT 3921 Query 176042 CTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCA 176101 || || || || | | | | ||| |||||||| | |||||||||||||| |||| Sbjct 3920 TTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGGGGTCCTGAAGCTCA 3861 Query 176102 GGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGG 176161 || || ||| || ||| || ||||| || | ||| | ||| |||| | ||||| Sbjct 3860 AGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTTATTGCATTACACGG 3801 Query 176162 TGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTA- 176220 ||| || | | | ||||| ||||||||||||||||||||| | || | ||| ||| Sbjct 3800 TGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCG-TTCA---GTAA 3745 Query 176221 ---TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGT 176277 | ||||| || ||||||||||| ||| | ||| || ||||| || ||| | Sbjct 3744 ACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTTCACTTCTGTTT 3685 Query 176278 TTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAG 176337 | || | || ||| |||||||||| ||||||||||| || ||||||||| |||| Sbjct 3684 TCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTTTGGTGTTGCAG 3625 Query 176338 CAATCTT 176344 ||||||| Sbjct 3624 CAATCTT 3618 Score = 187 bits (206), Expect = 4e-42 Identities = 228/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 176550 ACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTT 176609 ||||| ||||| |||||||| |||||||| || || || || || || ||||||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 176610 CACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATT 176669 |||||||| ||||| || || ||||| | ||||| ||| | || |||||| || | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAA 176729 || | || | || | ||||||||||| || || ||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 176730 GATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCA 176789 || ||||| ||||||||||||||||| || ||| | | | || ||||| | | || Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 176790 TGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCT 176849 |||||||| | || ||||||||||| ||||| ||||| |||||||| ||||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 176850 AGAGGTAACGC 176860 | |||||||| Sbjct 426 CGTGGTAACGC 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729837090547320