Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq5054 533 2e-146 seq4579 206 3e-48 >seq5054 Length=5139 Score = 533 bits (590), Expect = 2e-146 Identities = 544/702 (77%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 177858 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177917 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 177918 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 177976 ||| | | ||||| ||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 177977 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 178036 |||||| || ||||||||||| || | ||||| || | || || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 178037 TGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 178096 ||||| ||||| ||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 178097 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTT 178156 || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 178157 CCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTA 178215 ||| | ||| | | ||| |||||||| ||||| |||||| | || | ||||||||||| Sbjct 1144 CCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 178216 TGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCC 178275 |||| || |||||| ||| || ||||| ||||||||||| || || || || |||||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 178276 TGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTA 178335 | || || || |||| ||||||||||| || |||| |||||| | || || || |||| Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 178336 CATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACA 178395 |||| |||| |||| | || |||||||| || |||||||| || |||||||| ||||||| Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 178396 TGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGG 178455 |||| ||||| || |||||||| ||||||||| | ||| ||| ||||||||||| || | Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 178456 TTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATC-ACAGAACTATGGTTATAAG 178514 |||| || || | | |||||||| ||||||| ||||| ||| ||| ||||| Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCGT 1501 Query 178515 TTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 178556 ||||| |||||||||||||| |||||||| || || || ||| Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 178557 GGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 178616 || ||||| |||||| | ||||||||||| ||||||||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 178617 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 178676 |||||| | || || ||||| ||| | || || |||||||| || | || || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 178677 ATGGCATTTAACCTCAATGGATTC 178700 |||||||| ||| | || || ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 178699 TCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACG 178758 ||||||||||||| || | | ||| |||||| ||||| | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 178759 TGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCC 178818 | |||||||||| | || |||||||| ||||||||||| ||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 178819 CG 178820 || Sbjct 5070 CG 5071 >seq4579 Length=6132 Score = 206 bits (228), Expect = 3e-48 Identities = 353/509 (69%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 179220 TGGTTCGATG-TCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTC 179278 ||||| |||| | ||| | |||||| || | || || || || || || |||||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 179279 TGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGC 179338 || | ||||| | || ||||||| |||| | || || ||| ||||||| ||| | Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 179339 TTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTT 179398 ||||||||| ||||| || || ||| | |||| ||| || | || ||| |||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 179399 TCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 179458 | || ||||| || || || || || | | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 179459 GGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTT 179518 ||||||||| |||| || ||||| || ||||| || ||||| || | ||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 179519 CGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGC 179578 | || | |||||||| || | | | ||||||||||||||| | || |||||| |||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 179579 TCGCCTGATTGGTA----TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTG 179634 || | | ||| | | || || || || |||||||| || | ||| ||||||| Sbjct 3755 TC----GTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 179635 TATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGT 179694 | ||| ||||||||| || ||||| || || || || |||||| || || || Sbjct 3699 TTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAA 3640 Query 179695 CCTTTGGTGTCGCGGCGATCTTCAGGTTC 179723 ||||||||| || || |||||| | ||| Sbjct 3639 GCTTTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 194 bits (214), Expect = 2e-44 Identities = 232/314 (74%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 179922 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTT 179981 ||||||||||| |||||||| || ||||| ||| | || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 179982 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATT 180041 || || |||||||| || || ||||||| |||||||||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 180042 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAA 180101 ||| | || | ||| | |||||||| || ||||| ||| ||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 180102 GATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCA 180161 || || || ||||| || |||||||| || ||| || | | |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 180162 TGGTTGGCACCAGTT---GATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTG 180218 ||| |||| ||| || ||||||||||| || || ||||| |||||||| | Sbjct 486 TGGATGGCT---GTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTA 430 Query 180219 CCAAGAGGTAATGC 180232 || | ||||| || Sbjct 429 CCTCGTGGTAACGC 416 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 179727 CTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCT 179786 ||||| | || ||||| || |||||||| | ||||| ||||| |||||||| |||||| Sbjct 2139 CTGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCT 2080 Query 179787 GGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTG 179846 ||| | |||| | || | | ||||||| || || | ||||||||| || ||||| Sbjct 2079 GGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTA 2020 Query 179847 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 179906 | ||||||||| || || || || || || || | | ||||||| ||||| Sbjct 2019 TTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAA 1960 Query 179907 ACTTATTCTATGGT 179920 || ||||||||||| Sbjct 1959 ACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605932795858320