Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq5054 522 3e-143 seq4579 224 1e-53 >seq5054 Length=5139 Score = 522 bits (578), Expect = 3e-143 Identities = 542/703 (77%), Gaps = 8/703 (1%) Strand=Plus/Plus Query 158388 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 158447 ||| | ||||| || | ||||| | || ||||||||||||| ||| | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 158448 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 158506 ||| | | |||| |||| || |||||| |||| ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 158507 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 158566 |||||| || ||||||||||| || | ||||| || | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 158567 TGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 158626 ||||| ||||||||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 158627 CGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTT 158686 || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 158687 CCTTATCGGCATCTATGC--ATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGT 158744 |||| | || | ||||| || ||||| |||||||||||| | || | ||| |||||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 158745 ATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTC 158804 ||||| || |||||| ||| || || || || ||||| ||||| || || ||||||||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 158805 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 158864 | || || || |||| |||||||| ||||| || | |||||| | ||||| || ||| Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 158865 ACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCAT 158924 || ||||||| |||| | ||||||||||| || |||||||||||||||||||||||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 158925 ATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTC 158984 ||| | ||||||||||| ||||| ||||| || | |||||||||||||| || | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 158985 GTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTC-ACAGAACTATGGTTACAA 159043 |||||||| || | | |||||||| ||||||| || || ||| ||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCG 1500 Query 159044 GTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCAT 159086 ||||| ||||||||||| || || || || || || || ||| Sbjct 1501 TTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 152 bits (168), Expect = 6e-32 Identities = 120/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 159087 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 159146 |||||||| |||||| | ||||||||||||||||||||||||||||| ||||| || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 159147 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC 159206 |||||| | ||||| ||||| || |||| || |||||||| || | || | ||||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 159207 ATGGCATTCAACCTGAACGGTTTC 159230 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 159229 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 159288 ||||||||||||| || | | || || |||||||| || ||||| ||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 159289 TACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 159348 | | |||||||| | ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 159349 CACTCGACCTTGCTGCTGCTGAGTCAACT 159377 | | ||| | ||| || || | ||| || Sbjct 5070 CGTTAGACTTAGCTTCTTCTAACTCAGCT 5098 >seq4579 Length=6132 Score = 224 bits (248), Expect = 1e-53 Identities = 355/503 (71%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 159896 TGGTTTGAC-ATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTC 159954 |||||||| || || || ||||||||| | || |||||||| || || || ||||| Sbjct 4114 TGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 159955 TGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAAC 160014 || | | ||| | || ||||||| |||| | || || ||| ||||||| ||||| Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 160015 TTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTT 160074 ||| | || |||||||| ||||| | |||| ||| || | || ||| ||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 160075 TCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTG 160134 | || || | ||| || ||| || || | | | ||| |||||||| || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 160135 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTT 160194 ||||||||| |||||||| |||||| | ||| || ||||| || | ||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 160195 TGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGC 160254 | | ||| | || ||||| || | ||||||| |||||||| |||||||||||| | || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 160255 ACGTCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 160310 ||| || ||| | ||||| || || |||||||| ||||| | ||| ||||||| Sbjct 3755 TCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 160311 TCTTTGTCAGC-GTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCG 160369 | ||| | | || ||||| || || ||||| ||||| || ||||||| || ||||| Sbjct 3699 T-TTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCA 3641 Query 160370 TCCTTTGGGGTGGCAGCAATCTT 160392 |||||| || ||||||||||| Sbjct 3640 AGCTTTGGTGTTGCAGCAATCTT 3618 Score = 201 bits (222), Expect = 1e-46 Identities = 236/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 160598 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTT 160657 ||||||||||| |||||||| || ||||| ||| | || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 160658 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATT 160717 || || |||||||| || || ||||||| ||||| |||| || |||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 160718 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAA 160777 ||| | || | || | |||||||| || ||||| |||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 160778 GATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCA 160837 || || |||||||| || |||||||| || ||| | || | |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 160838 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCT 160897 ||| | || | |||||||| ||||| ||| | ||||| |||||||| | ||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 160898 AGAGGCAACGCCCTTTAAT 160916 | || ||||| || |||| Sbjct 426 CGTGGTAACGCTCTATAAT 408 Score = 105 bits (116), Expect = 7e-18 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 160400 CTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTT 160459 ||||| |||| |||| ||||| |||||||| | ||||| ||||| |||||||| ||| Sbjct 2139 CTGTTTTTCC---AAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTT 2083 Query 160460 GCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACA 160519 |||||| | |||| | || | | |||| || || || | ||||||||| |||||| Sbjct 2082 GCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACA 2023 Query 160520 CTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAA 160579 | | ||||||||| || || || || || || || | | ||||||| ||| Sbjct 2022 TTATTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAA 1963 Query 160580 GAGACTTATTCTATGGT 160596 || || ||||||||||| Sbjct 1962 GAAACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552403580877120