Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq5054 517 1e-141 seq4579 228 1e-54 >seq5054 Length=5139 Score = 517 bits (572), Expect = 1e-141 Identities = 543/704 (77%), Gaps = 10/704 (1%) Strand=Plus/Plus Query 178870 TGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCT 178929 ||| | || || || | || ||||| || | |||||||||||||| | |||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCC- 903 Query 178930 ACGT-TGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCG 178987 | || | ||| ||||||| ||| || |||||| | |||||| | || || || || || | Sbjct 904 ATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAG 962 Query 178988 ATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCT 179047 | || || || ||||||||||| || | ||||| || | || || |||||||| || | Sbjct 963 ACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTT 1022 Query 179048 CTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAG 179107 | ||||||||||| |||| ||| ||||| || ||||| ||||||||||| || ||||||| Sbjct 1023 CAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAG 1082 Query 179108 CAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACT 179167 | || || | || || ||| | |||||||||||||||| |||||| | || | ||||| Sbjct 1083 CTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACT 1142 Query 179168 TCCTTATCGGCATCTATGC--CTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGG 179225 ||||| | || | ||||| ||| ||||| ||||| |||||| | || | |||| |||| Sbjct 1143 TCCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGG 1200 Query 179226 TATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATT 179285 |||||||||||||||| |||||| ||||| || ||||| |||||||| || ||||| Sbjct 1201 TATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATT 1260 Query 179286 CCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGG 179345 | | || || || |||| |||||||| ||||| || | |||||| | ||||| || || Sbjct 1261 CTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGG 1320 Query 179346 TACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCA 179405 ||| ||||||| |||| | ||||||||||| || |||||||||||||||||||||||||| Sbjct 1321 TACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCA 1380 Query 179406 TATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCT 179465 ||| | ||||||||||| ||||| ||||| || | ||||||||||||||||| | Sbjct 1381 CATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATT 1440 Query 179466 CGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTC-ACAGAACTATGGTTATA 179524 |||||||| || | | |||||||||||||| | || || ||| ||| ||||| Sbjct 1441 AGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACC 1499 Query 179525 AGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACAT 179568 ||||| |||||||||||||| || ||||| || || || ||| Sbjct 1500 GTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 179569 GGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCAC 179628 || ||||| |||||| | ||||||||||| || || || |||||||| || || || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 179629 TTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACC 179688 |||||| | ||||| |||||||| |||| || |||||||||||| | || | ||||| Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 179689 ATGGCGTTCAACCTCAACGGTTTC 179712 ||||| |||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 179711 TCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACG 179770 ||||||||||||| || | | ||| ||||| ||||| | ||||| ||||||||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 179771 TATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 179830 | | |||||||| || ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 179831 CACTCGACCTTGCTGCTGCT 179850 | | ||| | ||| || || Sbjct 5070 CGTTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 228 bits (252), Expect = 1e-54 Identities = 356/503 (71%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 180018 TGGTTCGATG-TCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTC 180076 ||||| |||| | ||| | ||||||||| | ||||| || ||||| || || ||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 180077 TGGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGC 180136 || || ||||| | || ||||||| |||| | || || ||| ||||||| ||| | Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 180137 TTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTT 180196 |||||| || ||||| || || ||| | ||| |||| || | |||||| |||||| Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 180197 TCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 180256 | || ||||| || || || || || || | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 180257 GGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTT 180316 ||||||||| |||| || ||||| ||| ||||| || ||||| || | ||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 180317 CGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGC 180376 | || | |||||||| || | ||||||| || ||||| || ||||||||| | || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 180377 ACGTCTTATTGGTA----TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTG 180432 ||| | ||| | ||||| || || |||||||| ||||| | ||| || |||| Sbjct 3755 TCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTG 3700 Query 180433 TATTTGTCAGC-GTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCC 180491 | ||| | | || || || || || ||| | ||||| || |||||||||||||||| Sbjct 3699 T-TTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCA 3641 Query 180492 TCTTTTGGGGTAGCAGCAATCTT 180514 ||||| || ||||||||||| Sbjct 3640 AGCTTTGGTGTTGCAGCAATCTT 3618 Score = 214 bits (236), Expect = 2e-50 Identities = 234/311 (75%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 180720 ACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTT 180779 ||||||||||| |||||||| || ||||| ||| | || || || ||||| || |||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 180780 CATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATT 180839 || || |||||||| || || ||||||| |||||||||| || ||||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 180840 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 180899 ||| | || | ||| | |||||||| || ||||| ||||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 180900 GATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCA 180959 || ||||| || || || |||||||| || ||| | |||| |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 180960 TGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCA 181019 ||| |||| | || |||||||| ||| || | |||||||||||||| |||| Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 181020 AGAGGTAACGC 181030 | |||||||| Sbjct 426 CGTGGTAACGC 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610252248352320