Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1311 156 5e-33 seq3145 129 6e-25 >seq1311 Length=25178 Score = 156 bits (172), Expect = 5e-33 Identities = 132/160 (83%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCT 79438 ||||||||| ||||| |||||||||||| |||| ||| ||||||||| |||| ||||| Sbjct 6350 CTCCATGAACAGGTCGGGGATCCACAGG-CCGTAGAAAAGGTCGCGGGCACGCGCCTCCT 6292 Query 79439 CGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCA 79498 | | ||| |||||| ||||| || || ||||| | | ||| |||||||| ||||||| Sbjct 6291 CCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAGGGCTCCA 6232 Query 79499 GATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 ||||||||||||| ||||||||||||||||||||||| Sbjct 6231 TGTAGATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTG 6192 Score = 147 bits (162), Expect = 2e-30 Identities = 130/160 (81%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| |||||||| ||||||||| |||||||||||||| | ||||| |||||||||||| Sbjct 6192 CAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATCTACATGGAGCCCTGGCACGCGGAC 6251 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGAC 19585 || | || ||||| || |||||| |||||| || | |||||| ||| |||||| Sbjct 6252 GTGTTTGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGTGCCCGCGAC 6311 Query 19586 CTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 || ||| |||||| ||||||| || ||||| ||||||||| Sbjct 6312 CTTTTCTACGGCC-TGTGGATCCCCGACCTGTTCATGGAG 6350 Score = 114 bits (126), Expect = 1e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750 |||||||||| ||||||||||| ||||||||||||||| ||| || |||||||||||| Sbjct 5634 CCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCCGCATGGCCACCAGGAAGCAGG 5575 Query 79751 TCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 ||| | ||| ||| | ||| ||| ||||||||| || |||| ||||||||||| Sbjct 5574 ACGAGAGCTGGGGGCGGGGCGTGCCGCTGTTGAAGAGCGTGGGCGAGGCGTGCGTGAA 5517 Score = 114 bits (126), Expect = 1e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 20685 GCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGG 20744 ||||||||||||||||||||||||||||| |||| ||||||||| | || | | | | Sbjct 9699 GCGGCGCCTACATCGACCAGTCCCAGTCGTTCAACGTCTTCATGCCCGACCCCAACTTCG 9758 Query 20745 CGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACT 20804 ||||| | || |||| | |||| ||||| |||||| |||||||| |||||||||| Sbjct 9759 GCAAGCTCACGTCGCTGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACT 9818 Query 20805 ATCTGCGGACC 20815 | ||||| ||| Sbjct 9819 ACCTGCGCACC 9829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 19792 CCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAA 19851 ||||||||||||||| | ||||||||| |||||||||||| ||| |||||| || Sbjct 7274 CCAGGTCGAGACCGGTAACCCGTACATGCTGTACAAGGACGCCTGCAACAGCAAGTCCAA 7333 Query 19852 TCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAG 19906 ||| ||||| | ||| | ||||||| ||||||||||| || || ||| | ||| Sbjct 7334 CCAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCACCGAGATCGTAGAG 7388 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| || || ||||||||||||| | ||||| ||||||| Sbjct 7388 CTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTTGGA 7329 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| ||| |||||||||||||| ||||||||| | |||||||| ||||| Sbjct 7328 CTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACCTG 7275 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||| |||||||| ||||| ||| |||| | ||||| | Sbjct 9828 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAC 9769 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | |||||| | | | |||| |||||||| ||||| ||||||||||||||||||| Sbjct 9768 GTGAGCTTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAACGACTGGGACTGGTCGATG 9709 Query 78310 TACGCACCGC 78319 || || |||| Sbjct 9708 TAGGCGCCGC 9699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| | ||||||||| |||| || ||||||||||| |||||||||||| | |||||| Sbjct 8913 CACGGCGTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACCGCCTCGACCTCGCAGATC 8972 Query 20426 ATGGGGAACAACGAGG 20441 |||| |||||||||| Sbjct 8973 CTGGGCAACAACGAGG 8988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 79531 CCGC-CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 |||| |||||| ||||| |||||||||| |||||| || || ||||||||||||||||| Sbjct 5967 CCGCACCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCC 5908 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | |||||| || ||| ||| | || | || || ||||| | | | | Sbjct 5907 GTTCGAGGTGCCGTTGGTGCCGCGGATGTACGACCCAGTGGCGCGGATGTT-GTGGATCG 5849 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCT 79693 | |||||||| || | | |||||||||| |||||||||| Sbjct 5848 ACAGGCCGATGCCGCCTGCCGACTTGGAGATCACGGCGCACTCCT 5804 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||||||||| |||| || || |||||| ||| ||| | ||| ||| | ||| | Sbjct 5517 TTCACGCACGCCTCGCCCACGCTCTTCAACAGCGGCACGCCCCGCCCCCAGCTCTCGTCC 5576 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGG 19313 || ||||| ||||| ||| ||| ||| || || ||||||||||| |||||||||| Sbjct 5577 TGCTTCCTGGTGGCCATGCGGGACGACTCGATCGACGGCATCTACGACACGCTCAAGG 5634 >seq3145 Length=10667 Score = 129 bits (142), Expect = 6e-25 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || ||||||||||| ||||||||||| | || ||||||||||| ||||| ||| Sbjct 152 GTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 211 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| ||||| | |||||||||||||| || || || ||||||||||| || Sbjct 212 CTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCCTGCA 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548455281338160