Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1311 109 6e-19 seq330 87.8 2e-12 >seq1311 Length=25178 Score = 109 bits (120), Expect = 6e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || ||||||||| |||| || || |||||| || ||| | ||| ||| | ||| | Sbjct 5517 TTCACGCACGCCTCGCCCACGCTCTTCAACAGCGGCACGCCCCGCCCCCAGCTCTCGTCC 5576 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 |||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||||| Sbjct 5577 TGCTTCCTGGTGGCCATGCGGGACGACTCGATCGACGGCATCTACGACACGCTCAAGG 5634 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602 ||||| || || ||||||||||| |||||||||||||| | ||||| |||||||| ||| Sbjct 6192 CAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATCTACATGGAGCCCTGGCACGCGGAC 6251 Query 53603 ATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGAC 53662 | | || || || || ||||| ||| || || | || ||| ||| ||| ||| Sbjct 6252 GTGTTTGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGTGCCCGCGAC 6311 Query 53663 CTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 || || ||| || |||||||| || ||||| |||||| Sbjct 6312 CTTTTCTACGGC-CTGTGGATCCCCGACCTGTTCATG 6347 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||| |||||||| ||||| ||||| ||||| | |||||| || Sbjct 8916 GGCGTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACCGCCTCGACCTCGCAGATCCTG 8975 Query 55538 GGCAACAACGAGG 55550 ||||||||||||| Sbjct 8976 GGCAACAACGAGG 8988 >seq330 Length=56297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 152961 TCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGC 153020 || || ||| || ||||||||| || || |||||| || |||| ||| ||| || || Sbjct 37705 TCACCTGAGCGGGAACACGCCGTACTGGTCGCGGCCCACTACGCCCAGGCCGCTGATGGC 37764 Query 153021 AAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGT 153080 || || || |||||||| |||||||| | || ||||| ||||| | || || | Sbjct 37765 CAGCGCCTTGGCCGAGTCTCCCTCGGTCAGGATGAGCGTGCAGTCCTTGGAGCGGGGGCC 37824 Query 153081 ACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCC 153116 || || |||||||||||| ||||||| ||| || Sbjct 37825 GCCCGCGTCGTTGGCGTCGTCCAGCTTGGTGATGCC 37860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547146647212200