Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq330 125 8e-24 seq1311 113 5e-20 seq143 84.2 2e-11 seq601 82.4 9e-11 >seq330 Length=56297 Score = 125 bits (138), Expect = 8e-24 Identities = 184/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 ||||||| |||||||| | ||||||||| ||||| ||||||| |||||||||||| ||| Sbjct 35953 AGGTGGCCCAGCTGTCCGCCTACGTGGCCGAGCACTCGGCCTACCACCACGGCGAGACGT 35894 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 |||| ||| |||| |||||||| || ||| |||| || || | || ||| | ||| Sbjct 35893 CGCTGGCGGGAGCCATCGTCAACCTGGCGCAGGACTTCGTGGGCTCCAACAACGTCAACC 35834 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | || | || || ||||| || || ||||| || |||||||| || || Sbjct 35833 TGCTGCACCCCAGCGGTCAGTTCGGCACGCGGCTGCAGGGCGGCAAGGACGCCGCCTCGG 35774 Query 32234 CCCGTTACATCTTCACCCGTCT-CGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGAC 32292 | |||||||||| ||| || || || | || ||||| || | ||| || | ||| Sbjct 35773 CGCGTTACATCTACACGCGCCTGGGCGCGCTC-ACGCGGCAGCTGTTCAACGAGAACGAC 35715 Query 32293 GATGCGGTGCTCAAGTAC 32310 || | | ||||||| ||| Sbjct 35714 GACGTGCTGCTCAACTAC 35697 >seq1311 Length=25178 Score = 113 bits (124), Expect = 5e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||||| || || |||| || || |||||||| | |||||| | Sbjct 7389 ACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTTGG 7330 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||||| |||||| ||||||||||| |||||||||| |||||||||||||||| Sbjct 7329 ACTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACCTG 7275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 81230 CCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCT 81289 ||| |||||| ||| |||||||| ||| || ||| ||||||||| |||||||||| Sbjct 6351 CCTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCGCGGGCACGCGCCTCCT 6292 Query 81290 CATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCA 81349 | | || ||||| ||||| || || ||||| | | |||||| ||||| ||||||| Sbjct 6291 CCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAGGGCTCCA 6232 Query 81350 GATACACGGCGATCGACCCCTTGCG 81374 || | ||||| || |||||||| Sbjct 6231 TGTAGATGGCGAACGCGCCCTTGCG 6207 Score = 82.4 bits (90), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| ||||||||||| |||||||||||||| |||| |||| | ||||| || Sbjct 9828 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAC 9769 Query 80098 CTGAGCTT-CGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 ||||||| | |||| |||||| |||||||| ||| | ||||| ||||| Sbjct 9768 GTGAGCTTGCCGAAGT-TGGGGTCGGGCATGAAGACGTTGAACGACTGGGACTG 9716 >seq143 Length=80130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || |||||||| || || ||||| ||||| Sbjct 56532 ATGCAAATCTTCGTTAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCG 56591 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||| | || ||||||||||||||||| Sbjct 56592 GACACCATCGAGAATGTGAAGTCCAAGATTCAGGACAAGGAGGG 56635 >seq601 Length=42509 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 42308 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 42367 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| ||||| || || || ||||| || |||| || ||| Sbjct 42368 ACGCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCATCTGGTGCTGCGCCTGCGC 42427 Query 27628 GGTGG 27632 ||||| Sbjct 42428 GGTGG 42432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570238120285680