Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq5054 473 1e-128 >seq5054 Length=5139 Score = 473 bits (524), Expect = 1e-128 Identities = 512/673 (76%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 176149 TACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT 176208 ||| | |||||||| ||||| |||||||||||||||| || ||||| || || || Sbjct 872 TACATCGGTTGGTTCGGTGTAATCATGATTCCATGTCTTCTTACTGCAACATCAGTATTC 931 Query 176209 ATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCA 176268 ||| | || || || || || || || || || ||||| ||||| || |||||||| || Sbjct 932 ATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAACCAGTTTCA 991 Query 176269 GGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCA 176328 || ||||| || || || |||||||| || ||||| || || || |||| || ||||| Sbjct 992 GGTTCTCTTCTTTACGGTAACAACATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCT 1051 Query 176329 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAAT 176388 ||||| || |||||||||||||| |||||||| || | | ||||||||| | || || Sbjct 1052 ATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAATGGTTATATAAC 1111 Query 176389 GGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCT-CAGCTTACATGGG 176447 || || || |||||||| | || | |||||||||| | ||| | | | || |||||||| Sbjct 1112 GGTGGTCCTTACCAACTAATCGTTTGCCACTTCCTTTTAGGTGTATGCTGC-TACATGGG 1170 Query 176448 ACGCCAATGGGAACT-TAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 || |||||||| | | ||| | | |||| |||||||| |||||| |||||| |||| Sbjct 1171 TCGTGAATGGGAATTATCGTT-CCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACT 1229 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || |||||| |||| || || || ||| | || || ||| |||| ||||| || | Sbjct 1230 CAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTTAGTTTACCCAATCGGCCAAGGTTCAT 1289 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 |||| || |||||||| | || |||||||||||||| ||||| ||| | |||||||||| Sbjct 1290 TCTCAGACGGTATGCCATTAGGTATTTCAGGTACATTTAACTTCATGATCGTATTCCAAG 1349 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | ||||||||||| || |||||||| ||||| ||| | || || || ||||| ||||||| Sbjct 1350 CTGAGCACAACATCCTTATGCACCCGTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTG 1409 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || | ||||| || |||||||| | |||||||| || | | | || |||| Sbjct 1410 GTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATCCGTGAAACAA 1469 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||||||||| |||| |||||| ||||| |||||||||||||| ||||||| Sbjct 1470 CTGAAAACGAATCTACAAACGCAGGTTACCGTTTCGGTCAAGAAGAAGAGACTTACAACA 1529 Query 176807 TTGTAGCTGCACA 176819 |||||||||| || Sbjct 1530 TTGTAGCTGCTCA 1542 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 176821 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCAC 176880 ||||||||||||||||| |||||||| || ||||| ||||| ||||| | | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 176881 TTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACA 176940 |||||| | || || | || || | | || ||||| ||||| | ||| | | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 176941 ATGGCATTCAACCTTAACGGTTTC 176964 |||||||||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| || ||| | |||||||| ||| | ||||||||||| |||||||||||||| Sbjct 4997 ACTTGGGCGGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 5056 Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| | ||| | ||| || Sbjct 5057 GCTCACAACTTCCCGTTAGACTTAGCTTCT 5086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603417914628480