Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2609 95.1 3e-14 seq8888 89.7 1e-12 seq601 89.7 1e-12 seq2491 84.2 5e-11 seq143 84.2 5e-11 >seq2609 Length=13299 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || ||||| || || | ||||| Sbjct 1854 AGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGCCCATCC 1795 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 || ||||||||||| |||||||||||||| || ||||| || |||| ||| Sbjct 1794 TCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGGGGAATGCCT 1744 >seq8888 Length=1414 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | || || Sbjct 1119 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 1178 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || ||||| || || | ||| Sbjct 1179 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 1229 >seq601 Length=42509 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| || ||||| ||||| ||||| ||| || ||||| Sbjct 41726 CCCTCCTTGTCCTGAATCTTGGACTTGACGTTCTCGATAGTGTCCGAGGACTCCACCTCA 41667 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| ||||| | |||||| Sbjct 41666 AGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 41623 >seq2491 Length=14023 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| || |||||||| || || ||||| Sbjct 13383 CCCTCCTTGTCCTGGATCTTAGACTTGACGTTCTCAATGGTGTCCGAAGACTCCACCTCC 13324 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 13323 AGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 13280 >seq143 Length=80130 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 56635 CCCTCCTTGTCCTGAATCTTGGACTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 56576 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | ||||| Sbjct 56575 AGGGTGATAGTCTTACCCGTGAGGGTCTTAACGAAGATTTGCAT 56532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159001419272735