Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4701 102 2e-16 seq6614 84.2 5e-11 >seq4701 Length=5848 Score = 102 bits (112), Expect = 2e-16 Identities = 99/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | | Sbjct 1313 GGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 1254 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || | ||| |||| Sbjct 1253 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTTATCGCG 1194 Query 7856 TTAGCT 7861 |||||| Sbjct 1193 TTAGCT 1188 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||||| |||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 624 TGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 682 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 683 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 722 >seq6614 Length=2957 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 2318 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 2260 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGA 6860 ||||| |||| ||| |||||||||||||| ||| Sbjct 2259 CAGTGAGGAATTTTTCGCAATGGGCGAAAGCCTGA 2225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192376283116466