Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq5054 488 7e-133 seq4579 262 5e-65 >seq5054 Length=5139 Score = 488 bits (540), Expect = 7e-133 Identities = 532/701 (76%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 183205 TGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCA 183264 |||||||| ||| | ||||| | || | |||||||| || | | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 183265 ACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGA 183323 ||| | | ||||| ||| | |||||| | || ||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 183324 CATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTC 183383 |||||| || ||||| ||||| ||| | || || || | || || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 183384 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGC 183443 ||||| ||||| || |||| ||||| || || ||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 183444 AGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTT 183503 || || | || || ||| | ||||||||||||||||||||||| | || | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 183504 CCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTAT 183563 ||| | || || | |||||||||||||||||| |||||||| || | |||| | ||||| Sbjct 1144 CCTTTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTAT 1203 Query 183564 GCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCT 183623 |||||| |||||| ||||||||| || || || |||||||| | ||||| ||| | Sbjct 1204 GCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTT 1263 Query 183624 GGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCAC 183683 || || || |||| |||||||| || || |||||||| | ||||| || || Sbjct 1264 AGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTAC 1323 Query 183684 CTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACAT 183743 ||||||| ||| | || |||||||| |||||||||||||| |||||||| |||||||| Sbjct 1324 ATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACAT 1383 Query 183744 GCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 183803 | | ||||| |||||||| || |||||||| | ||| ||| ||||||||||| | || Sbjct 1384 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGT 1443 Query 183804 TACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTC-ACAGAACTATGGTTACAAGT 183862 |||||| || | | |||||||| ||||| || || ||| ||| |||||| | Sbjct 1444 TACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCGTT 1502 Query 183863 TCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCAT 183903 ||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 131 bits (144), Expect = 2e-25 Identities = 117/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 183904 GGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCAC 183963 || |||||||||||||| |||||||| || ||||| || ||||| |||||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGC-AC 184022 |||||| | ||||||||||| || |||| || ||||| |||||| | ||| ||| | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 3747 Query 184023 TATGGCATTTAACCTGAATGGTTT 184046 ||||||||| ||| | || ||||| Sbjct 3748 TATGGCATTCAACTTAAACGGTTT 3771 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 184048 AACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTT 184107 ||||||||||| || | | || ||||||||||| | ||||| ||||| ||| | Sbjct 4952 AACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACATC 5011 Query 184108 CTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCT 184167 ||||||||||| | || |||||||| |||||||||||||| |||||||||||||| Sbjct 5012 ATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCG 5071 Query 184168 CTCGACCTTGCTGCTGCT 184185 | ||| | ||| || || Sbjct 5072 TTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 262 bits (290), Expect = 5e-65 Identities = 359/499 (72%), Gaps = 2/499 (0%) Strand=Plus/Minus Query 185957 ATGGTTCGATG-TCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGT 186015 |||||| |||| | ||| ||||||||||| | ||||| || || || || || |||| Sbjct 4115 ATGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGT 4057 Query 186016 CTGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAA 186075 | || ||| | ||||| || ||||||| | ||| | ||||||||| ||||||| |||| Sbjct 4056 CAGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAA 3997 Query 186076 CGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATT 186135 | |||||||| |||||||| || || || || |||||||| | || ||| ||| | Sbjct 3996 CTTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACT 3937 Query 186136 TTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTT 186195 | | || ||||| || ||||| || || || | | | ||| |||||||| | ||| Sbjct 3936 TCTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTT 3877 Query 186196 GGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATT 186255 |||||||||| ||||||| ||| ||| || |||| || ||||| || | ||| | Sbjct 3876 GGGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCAT 3817 Query 186256 TTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCA 186315 || | || | ||||| || |||| | | || ||||||||||| || ||||||||||| Sbjct 3816 TTATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTG 3757 Query 186316 GTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCT 186375 |||| ||| | |||||||| || || |||||||| || | ||| || ||||| | Sbjct 3756 CTCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTT 3697 Query 186376 TTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCT 186435 | | ||| ||||| || || || | || || || |||||||| ||||| || Sbjct 3696 TCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCT 3637 Query 186436 TTGGAGTCGCAGCAATCTT 186454 |||| || ||||||||||| Sbjct 3636 TTGGTGTTGCAGCAATCTT 3618 Score = 192 bits (212), Expect = 7e-44 Identities = 231/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 186660 ACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTT 186719 ||||| ||| | ||||||||||| ||||| || | || || || || ||||||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 186720 CATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATT 186779 || ||||||||| | || |||||||||| ||||| |||| ||| | ||||| ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 186780 GGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAG 186839 ||| | || | ||| | |||||||||||||| || ||| ||| | | || || || Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 186840 GATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCC 186899 || ||||| || || || ||||| || || || | |||| ||||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 186900 TGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCA 186959 |||||||| || |||||||||||| ||||| || ||||||||||| || || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 186960 AGAGGCAACGCTCT 186973 | || |||||||| Sbjct 426 CGTGGTAACGCTCT 413 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 186466 TGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAG 186525 |||| ||||||| || || |||||||| || || |||||||||||||||||||| || | Sbjct 2138 TGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTG 2079 Query 186526 GTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTT 186585 || | | |||| |||| | | | || || || |||| |||||||||||| || | | Sbjct 2078 GTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2019 Query 186586 ATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAA 186645 ||||||||| || || ||||| ||| |||||| | | || || | ||||||| Sbjct 2018 TTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAA 1959 Query 186646 CCTATTCGATGGT 186658 | ||||| ||||| Sbjct 1958 CATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621991560352680