Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq5054 486 2e-132 seq4579 251 8e-62 >seq5054 Length=5139 Score = 486 bits (538), Expect = 2e-132 Identities = 529/700 (76%), Gaps = 4/700 (1%) Strand=Plus/Plus Query 163937 TGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCC 163996 ||| | |||||||| || || ||||| || ||||||||||||| || | |||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 163997 TGCCTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGAC 164056 || || || | || || || ||||||||||| ||||||| |||||| || || ||| Sbjct 905 TGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGAC 964 Query 164057 ATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCT 164116 |||||||| ||||| ||||| || | ||||| || | || || |||||||| || || Sbjct 965 ATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCA 1024 Query 164117 GGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCA 164176 ||||||||| | || ||||||||||||||||||| ||||||||||| || |||||||| Sbjct 1025 GGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCT 1084 Query 164177 GCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTC 164236 || | | ||||||||| | || ||||||||||||| |||||| | || | ||||||| Sbjct 1085 GCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTC 1144 Query 164237 CTGATTGGCATCTATGCT--TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTA 164294 || | || | |||||| |||||||||||||| |||||| | || | |||| | |||| Sbjct 1145 CTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 164295 TGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCC 164354 ||||||| ||||| || || ||||| ||||| || ||||| || || || ||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 164355 TGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAA 164414 | || || || |||| |||||||| ||||| || | ||||| | || || || || | Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 164415 CCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATA 164474 | || |||| |||| | || ||||| ||||||||||||||||| |||||||| ||||| | Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 164475 TGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGG 164534 || | || || || ||||| ||||| ||||| | ||| ||| ||||||||||| | | Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 164535 TTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGT 164594 ||||||| || | | ||||| || || ||||| || || ||| |||||| | Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTT 1502 Query 164595 TTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCA 164634 | ||||| |||||||| || |||||||| || || ||||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 141 bits (156), Expect = 1e-28 Identities = 120/145 (83%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 164636 GGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCAC 164695 ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 164696 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGC-AC 164754 |||||| | || || ||||| || ||||||| ||||| |||||| | || ||| | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGG-TTTATCAAC 3747 Query 164755 CATGGCATTCAACCTCAACGGTTTC 164779 |||||||||||| | ||||||||| Sbjct 3748 TATGGCATTCAACTTAAACGGTTTC 3772 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 164778 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 164837 ||||||||||||| || | | || || |||||||| | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 164838 TTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 164897 | ||||||||||| | || |||||||| |||||||||||||| ||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 164898 CTCTCGACCTTGCTGCTGCT 164917 | | ||| | ||| || || Sbjct 5070 CGTTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 251 bits (278), Expect = 8e-62 Identities = 361/508 (71%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 165150 TGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 165209 ||||| |||| ||| ||||||||| |||||||||||| || || || ||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 165210 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 165269 || | | ||||| || ||||||| |||| || || || ||| ||||||| || ||| Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 165270 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTT 165329 || || || ||||||||||| || | || | ||| || | || ||| ||||| Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 165330 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGG 165389 | ||||| || ||||| || ||| | || | | | ||| |||||||| || | ||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 165390 GGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTT 165449 |||||||| ||||||| || |||| || ||||| || ||||| || | ||| | ||| Sbjct 3874 GGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTT 3815 Query 165450 GTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCA 165509 | || | ||||| || |||| | || |||||||||||||| ||||||||| | || Sbjct 3814 ATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 3755 Query 165510 CGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 165565 || || ||| | ||||| || || |||||||||||||| | ||| |||||||| Sbjct 3754 CG----TTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGT 3699 Query 165566 ATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTC 165625 ||| | |||||| || || ||||| | || ||||| |||||||| || || Sbjct 3698 TTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAG 3639 Query 165626 GTTCGGGGTCGCAGCAATCTTCCGATTC 165653 || || || |||||||||||||| ||| Sbjct 3638 CTTTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 232 bits (256), Expect = 7e-56 Identities = 242/318 (76%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 165852 ACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTT 165911 ||||| |||||||||||||| || || |||||| | |||||| || || ||||||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 165912 CACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATT 165971 |||||||| ||| | || |||||||| | || || |||| | |||||||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 165972 GGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAG 166031 ||| | ||| | || | ||||||||||| || || ||||| |||||| | |||||||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 166032 GATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCC 166091 || || || |||||||| ||||| ||||||||| | | | |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 166092 TGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCA 166151 ||| ||||| | ||||||||| ||||| ||||| |||||||||||||| || || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 166152 AGAGGCAACGCACTTTAA 166169 | || ||||| || ||| Sbjct 426 CGTGGTAACGCTCTATAA 409 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 165664 TCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCT 165723 ||||||| || ||||||||||| | || || || ||||||||||| || || ||| | | Sbjct 2132 TCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTT 2073 Query 165724 TAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 165783 |||| | || || | | ||| ||||| |||| ||| ||||| || || || | ||||| Sbjct 2072 TAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAG 2013 Query 165784 ATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATT 165843 ||||||| || ||||||||| ||||| | ||| |||| || ||||| |||| Sbjct 2012 ATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATT 1953 Query 165844 CCATGGT 165850 | ||||| Sbjct 1952 CTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583724275480