Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq5054 533 2e-146 seq4579 264 1e-65 >seq5054 Length=5139 Score = 533 bits (590), Expect = 2e-146 Identities = 542/701 (77%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 177607 TGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCT 177666 ||| | || || || | || ||| | || |||||||||||||||| | ||||| || Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 177667 ACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGA 177725 || || |||| | ||| || |||||| |||||||| |||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 177726 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTC 177785 |||||| || ||||||||||| || | ||||| || | || || |||||||| ||||| Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 177786 TGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGC 177845 ||||||||||| || ||||||||||||| ||||| |||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 177846 AGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTT 177905 |||||| | || || ||| | || || |||||||||| |||||| | | | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 177906 CCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTA 177964 ||| | ||| | | ||| |||||||||||||| |||||| | || | ||| |||||| Sbjct 1144 CCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 177965 TGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCC 178024 ||||||| |||||| ||| || ||||| |||||||| || || || || ||||||||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 178025 TTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCA 178084 | ||||| || |||| |||||||| ||||| |||| |||||| | ||||| || | Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 178085 CCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACA 178144 | || |||| |||| | || |||||||| |||||||||||||| |||||||| ||||||| Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 178145 TGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGG 178204 |||| || || |||||||| ||||||||||| | ||| ||| ||||||||||| | | Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 178205 TTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGT 178264 ||||||| || | | |||||||| || || |||||| | ||| |||||| | Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTT 1502 Query 178265 TCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 ||||||||||||||||||| |||||||| || ||||||||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 141 bits (156), Expect = 1e-28 Identities = 120/145 (83%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 |||||||| ||||| || |||||||||||||| || ||||||||||| ||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGC-AC 178424 |||||| | || || ||||| || ||||||| |||||||||||| | ||| ||| | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 3747 Query 178425 CATGGCATTCAACCTCAACGGTTTC 178449 |||||||||||| | ||||||||| Sbjct 3748 TATGGCATTCAACTTAAACGGTTTC 3772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551 ||||| ||||| ||| | ||||||||||| | ||||||||||| |||||||||||| Sbjct 4994 AACACTTGGGCGGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGT 5053 Query 178552 AATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCT 178587 || |||||||||||||| | ||| | ||| || || Sbjct 5054 AACGCTCACAACTTCCCGTTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 264 bits (292), Expect = 1e-65 Identities = 363/505 (72%), Gaps = 2/505 (0%) Strand=Plus/Minus Query 178836 TGGTTTGATG-TACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTC 178894 |||||||||| | || |||||||||||| | || || ||||| || || |||||||| Sbjct 4114 TGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 178895 AGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAAC 178954 |||| | | || |||||| |||||| | ||||| || || ||| | || || ||||| Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 178955 ATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTT 179014 || || || || ||||||||||| || | ||| |||| || | || || ||||| || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 179015 CCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATG 179074 | | ||||| || || ||||| || || || | | | || || || || || | || Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 179075 GGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTT 179134 |||||| |||||||| || |||||| || ||| || ||||| || ||||| | || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 179135 TGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGC 179194 | | || | |||||||| || | | | || |||||||||||||| ||||||||||| || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 179195 ACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTT 179254 ||| ||| | ||||| || || || || || || || | |||||||||||| || Sbjct 3755 TCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTT 3696 Query 179255 TGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTT 179314 |||||||| || || ||||| | || || || ||||||||||| || || Sbjct 3695 CACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTT 3636 Query 179315 TGGAGTTGCAGCGATTTTCCGCTTC 179339 ||| |||||||| || ||||| ||| Sbjct 3635 TGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 228 bits (252), Expect = 1e-54 Identities = 239/314 (76%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 179538 ACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTA 179597 ||||| |||||||||||||| || ||||||||| | || ||| || || |||||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 179598 CATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATT 179657 || ||||| ||||| || |||||||| | ||||| |||| ||| ||||||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 179658 GGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAG 179717 ||| | ||| | ||| | | ||||||||||| ||||| |||||||| | || || || Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 179718 GATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCT 179777 || ||||| || || || ||||| || || ||| | |||| ||||||||| | |||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 179778 TGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCA 179837 |||||||| || |||||||||||| ||||| || |||||||||||||| || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 179838 AGAGGCAACGCTCT 179851 | || |||||||| Sbjct 426 CGTGGTAACGCTCT 413 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 179352 CAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTG 179411 || || || || |||||||| | ||||| ||||||||||||||||| || ||| | | Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 179412 GGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGAC 179471 || | || || | ||||| ||||| |||||||| ||||| |||||| | |||||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 179472 AGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCG 179531 |||| | || || ||| |||||| | |||||||| | || || || ||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 179532 ATGGT 179536 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596231625516240