Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq5054 527 7e-145 seq4579 244 1e-59 >seq5054 Length=5139 Score = 527 bits (584), Expect = 7e-145 Identities = 538/700 (77%), Gaps = 4/700 (1%) Strand=Plus/Plus Query 169361 TGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCC 169420 ||| | || || ||||| |||||| | || ||||||||||||| || | ||||| || Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 169421 TGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGAC 169480 || || || | ||||| | ||||||||||| ||||||| |||||| || || ||| Sbjct 905 TGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGAC 964 Query 169481 ATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCT 169540 ||||| || ||||| ||||| ||| | |||||||| | || ||||||||||| || || Sbjct 965 ATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCA 1024 Query 169541 GGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCA 169600 ||||||||||| || |||| ||||| ||||||||||||||||| || || |||||||| Sbjct 1025 GGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCT 1084 Query 169601 GCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTC 169660 || | | || |||||||| || ||||||||||||| |||||| | || | ||||||| Sbjct 1085 GCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTC 1144 Query 169661 CTCATCGGCATCTATGCT--TACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTA 169718 || | || | |||||| |||||||||||||| |||||||| || | ||| | |||| Sbjct 1145 CTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTA 1202 Query 169719 TGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCC 169778 |||| || |||||| |||||||||||| ||||| || || || || || ||||| ||| Sbjct 1203 TGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCT 1262 Query 169779 TGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAA 169838 | || ||||| | || ||||| || ||||| |||| |||||| | ||||| || || | Sbjct 1263 TAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTA 1322 Query 169839 CCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACA 169898 | ||||||| |||| | || ||||||||||||||||||||||| |||||||| ||||||| Sbjct 1323 CATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACA 1382 Query 169899 TGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCG 169958 || | |||||||| || || |||||||| || | || || ||||||||| | | Sbjct 1383 TGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAG 1442 Query 169959 TCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGT 170018 | ||||| | | |||||||||| || || ||||| || ||| |||||| | Sbjct 1443 TTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTT 1502 Query 170019 TCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCA 170058 ||||||||||||||||||| |||||||| || || ||||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Score = 138 bits (152), Expect = 1e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 170060 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCAC 170119 |||||||| ||||| || ||||||||||||||||| ||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 170120 TTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACG 170179 |||||| | || || ||||| || | || || |||||||| ||| | ||| | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 170180 ATGGCGTTCAACCTGAACGGTTTC 170203 ||||| |||||| | ||||||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 170202 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 170261 ||||||||||||| || | | || || |||||||| | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 170262 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 170321 | ||||||||||| | || |||||||| |||||||||||||| ||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 170322 CTCTCGACCTCGCTGCTGCT 170341 | | ||| | ||| || || Sbjct 5070 CGTTAGACTTAGCTTCTTCT 5089 >seq4579 Length=6132 Score = 244 bits (270), Expect = 1e-59 Identities = 361/506 (71%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 170592 TGGTTCGATG-TCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTC 170650 ||||| |||| | ||| ||||||||||| | || || || ||||| || || ||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 170651 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGAC 170710 || | | ||||| || ||||||| ||||| | || |||||| |||| || || || Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 170711 ATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTT 170770 ||||||||| ||||| || || || | || | ||| ||| | |||||| ||| || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 170771 CCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 170830 | | || || || || ||||| || || | | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 170831 GGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTT 170890 ||||||||| |||| || |||||| ||| |||| || ||||| || | ||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 170891 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAG 170950 | | || | ||||| || |||| | | || |||||||||||||| ||||||||||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 170951 TCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTT 171010 |||| ||| | | || || || || || |||||||| | ||| || ||||| || Sbjct 3755 TCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGT-TT 3697 Query 171011 TGTCAGC-GTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCT 171069 | | | || ||||| || ||||| | || || ||| |||||||||| || || || Sbjct 3696 TCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCT 3637 Query 171070 TTGGAGTTGCAGCAATCTTCCGCTTC 171095 |||| ||||||||||||||||| ||| Sbjct 3636 TTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 176 bits (194), Expect = 5e-39 Identities = 233/321 (73%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 171294 ACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTG 171353 ||||| || ||||||||||| || || |||||| | || ||| || || |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 171354 CATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATT 171413 || ||||| ||| | || |||||||| | ||||| ||| | | | | || ||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 171414 GGTCTTGCTCTTAATCTTAGG-GCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGA 171472 ||| | || | || |||| | |||||||| ||||| ||| ||| | | || || || Sbjct 606 GGTTTAGCAGTAAA-CTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGA 548 Query 171473 AGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGC 171532 ||| || || || || || ||||| || || ||| | |||| ||||||||| ||||||| Sbjct 547 AGACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGC 488 Query 171533 ATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACC 171592 |||||||| |||||||||||||||| ||||| ||||| || ||||| |||| Sbjct 487 TTGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACC 428 Query 171593 TCGTGGCAATGCACTTTGATT 171613 |||||| || || || | ||| Sbjct 427 TCGTGGTAACGCTCTATAATT 407 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171108 CAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTC 171167 |||||||| || |||||||| | || ||||| || |||||||||||||| ||| | | Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 171168 GGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGAT 171227 || | ||| || | | ||| ||||| |||| ||| ||||| || || || | ||||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 171228 GGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCT 171287 |||||| || ||||| || ||||| || | || |||| ||||| ||||||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 171288 ATGGT 171292 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592123346255280