Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq235 105 1e-17 seq601 96.9 7e-15 seq143 95.1 3e-14 seq2621 93.3 9e-14 seq2491 93.3 9e-14 seq8888 91.5 3e-13 seq2609 89.7 1e-12 >seq235 Length=65441 Score = 105 bits (116), Expect = 1e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 317021 CCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGC 317080 |||| | |||||| || |||| ||| ||||| |||| || | |||||| || ||||||| Sbjct 26763 CCTTGGGCGGGAAGCCGTCCACCTGGCCGTTGGCAATGGCGCGCATCAGCGTGGACTTGC 26704 Query 317081 CAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGT 317140 | |||| ||||||||||| || || || || || |||||| | || || Sbjct 26703 CCACACCGTTGGGGCCGCACAGGCCGTAGCGGCGGCCACGCTTCAGGCGCAGCGCGGCGT 26644 Query 317141 TGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGC 317200 |||| || |||||||| |||| || ||||| |||||||| || | ||||| || |||| Sbjct 26643 TGTTGAGCAGAATCTTGGCACCGTAGGCCAGCGAGAACTCGCAGTTGCACAGCTCATCGC 26584 Query 317201 C 317201 | Sbjct 26583 C 26583 >seq601 Length=42509 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || |||||||| | || || || ||||||||||||||||| Sbjct 42432 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 42373 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||| || ||||| || || || ||||| ||||||| || || ||||| Sbjct 42372 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 42320 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| | || ||| | |||||||||||||| | || || || Sbjct 41727 ACCCTCCTTGTCCTGAATCTTGGACTTGACGTTCTCGATAGTGTCCGAGGACTCCACCTC 41668 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| | ||||| || || |||||||| Sbjct 41667 AAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 41623 >seq143 Length=80130 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| | || || | ||||| |||||||||| || || || Sbjct 56636 ACCCTCCTTGTCCTGAATCTTGGACTTCACATTCTCGATGGTGTCCGAAGACTCCACCTC 56577 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||||||||| | ||||||||||| || ||||| Sbjct 56576 GAGGGTGATAGTCTTACCCGTGAGGGTCTTAACGAAGATTTGCAT 56532 >seq2621 Length=13211 Score = 93.3 bits (102), Expect = 9e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | || || || ||||||||||||||||| Sbjct 13113 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 13172 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| || || || ||||| |||||| Sbjct 13173 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATC 13211 >seq2491 Length=14023 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| |||||||| | || ||| | || || |||||||||| || || | Sbjct 13385 TACCCTCCTTGTCCTGGATCTTAGACTTGACGTTCTCAATGGTGTCCGAAGACTCCACCT 13326 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 13325 CCAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 13280 >seq8888 Length=1414 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | || || || ||||||||||||||||| Sbjct 1104 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 1163 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||| ||||| || || || ||||| ||||||| || || ||||| Sbjct 1164 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1216 >seq2609 Length=13299 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || || || || | |||||| || || |||||||||||||| || |||||||| Sbjct 1860 AGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGC 1801 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||| || || || ||||| ||||| | || || ||||| Sbjct 1800 CCATCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTC 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046603222362906