Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2609 89.7 4e-13 seq601 89.7 4e-13 seq8888 84.2 2e-11 >seq2609 Length=13299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 44117 CTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGG 44176 || || | || ||| ||||| |||||||||||||| ||||||||||| || || || | Sbjct 1863 CTGAGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTG 1804 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || || |||||||| ||||| ||||| | |||||||| || Sbjct 1803 CGCCCATCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTC 1757 >seq601 Length=42509 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| || || || |||||| ||||||||||| || Sbjct 42436 CATGCCACCGCGCAGGCGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 42377 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || |||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 42376 AGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 42320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 |||||||| | ||| |||||||||| ||| |||||||| ||||| ||||||||||||||| Sbjct 42501 ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAG 42442 Query 44330 ATTTGCATG 44338 || |||||| Sbjct 42441 ATCTGCATG 42433 >seq8888 Length=1414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| ||||||||||| || || || ||| |||| || Sbjct 1121 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTC 1180 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| |||||||| || Sbjct 1181 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359945916323763