Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq601 87.8 4e-12 seq143 87.8 4e-12 seq2609 86.0 2e-11 seq2491 84.2 5e-11 >seq601 Length=42509 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || || |||||||| |||||||| ||| ||| Sbjct 41626 CAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCGGAC 41685 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || |||||||||||||| |||||||||||||| || || Sbjct 41686 ACTATCGAGAACGTCAAGTCCAAGATTCAGGACAAGGAGGG 41726 >seq143 Length=80130 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 56535 CAAATCTTCGTTAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCGGAC 56594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || || |||||||||||||| || || Sbjct 56595 ACCATCGAGAATGTGAAGTCCAAGATTCAGGACAAGGAGGG 56635 >seq2609 Length=13299 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/104 (79%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || ||||||||||| || || ||||| || |||||||| | |||||||| ||| Sbjct 1505 CAGATTTTCGTGAAGACGCTTACAGGGAAGACGATCACGTTGGAGGTGGAGTCTAGC--- 1561 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||| ||| |||||||||||||| || || Sbjct 1562 GACACCATCGAGAACGTAAAATCCAAGATTCAGGACAAGGAGGG 1605 >seq2491 Length=14023 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 13283 CAGATTTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTGGAGGTGGAGTCTTCGGAC 13342 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| ||||||||||| ||||| |||||||| || || Sbjct 13343 ACCATTGAGAACGTCAAGTCTAAGATCCAGGACAAGGAGGG 13383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203574828169966