Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq601 122 8e-23 seq8888 118 1e-21 seq2609 113 4e-20 seq2491 98.7 9e-16 seq143 95.1 1e-14 seq2621 82.4 7e-11 >seq601 Length=42509 Score = 122 bits (134), Expect = 8e-23 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||||||||| || ||||||||| ||||| ||||| | Sbjct 42433 GCCACCGCGCAGGCGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 42374 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 42373 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 42314 >seq8888 Length=1414 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| | Sbjct 1103 GCCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 1162 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 1163 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 1222 >seq2609 Length=13299 Score = 113 bits (124), Expect = 4e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || |||||||||||||||||||| ||||| ||||| | || |||||| Sbjct 1860 AGGCGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGC 1801 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 | || || ||||||||||||||||| || |||||||| ||||| | ||||| || Sbjct 1800 CCATCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGGGGAATGC 1746 Score = 82.4 bits (90), Expect = 7e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 41798 GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATC 41857 |||||||| ||||||||||||| ||| ||||| || || || |||||||| ||||||||| Sbjct 1566 GTGTCGCTAGACTCCACCTCCAACGTGATCGTCTTCCCTGTAAGCGTCTTCACGAAAATC 1507 Query 41858 TGCAT 41862 ||||| Sbjct 1506 TGCAT 1502 >seq2491 Length=14023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| | |||||||| |||| || ||||||||||||||||| Sbjct 14016 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 13957 Query 41731 TATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||||| ||||||| ||| Sbjct 13956 GATCAGGCGCTGCTGGTCCGGGGG 13933 >seq143 Length=80130 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| ||||||| |||||||| |||| || ||||||||||||||||| | Sbjct 56903 CCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 56844 Query 41733 TCAGGCGCTGTTGGTCCGCGGG 41754 |||| ||||| ||||| | ||| Sbjct 56843 TCAGACGCTGCTGGTCAGGGGG 56822 >seq2621 Length=13211 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| | Sbjct 13112 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 13171 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || ||||| | || || ||||||||||||||||| ||| Sbjct 13172 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATC 13211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462245408746800