Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1542 122 2e-22 seq1556 91.5 3e-13 seq1521 89.7 1e-12 seq1505 89.7 1e-12 >seq1542 Length=2112382 Score = 122 bits (134), Expect = 2e-22 Identities = 257/381 (67%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 319346 ||||| |||||| |||||| | ||| |||||| ||| | ||||||||||| | ||| Sbjct 773513 CTTCAGGATGGCCTTGTCCTTGGTCTTGACACCCTCCAGGTAGCCGGGCTCGGGCAGCTT 773572 Query 319347 CCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCAC 319406 | || | | | || || ||||||| | | ||||| || || ||| Sbjct 773573 GAAGGTCAGGGTGGAGGCAGTCAGCTCGTAGTAGGCCTTGGCCTCGGGCTTCTGCTCCAC 773632 Query 319407 GAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAAT 319466 ||||| || || || ||||||||| |||||| |||| ||| ||| | ||| || Sbjct 773633 GAACTTCGAGAGGTTGCCCTTGTACACGCGCAGCTTGCGGTT--GTT-GTAGTCGATGAT 773689 Query 319467 AGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTC 319526 ||||| || ||| ||||| ||||||||||| |||||||| | | | || || || Sbjct 773690 GTGCGTGCACACGTGGTCCAGGAAGCCGGAGTCGTGCGACACAATGATGGAGGACACCTC 773749 Query 319527 CTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGT 319586 | ||| | |||||| || || |||| | ||||| ||| ||||||||||| Sbjct 773750 GTCCAGGCCCACCAGGTAGTCCTCCAGCCACTTGACGTTGTGCACGTCCAGATGGTTGGT 773809 Query 319587 CGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTT 319646 |||||||| || |||| | | | |||| ||||| | || || || || || || Sbjct 773810 GGGCTCGTCCAGGAGCATGATGTCGGGCTTCATCAGCATGGTGCGGGCCAGCGCCAGCTT 773869 Query 319647 CATTTTCCACCCTCCGGAAAG 319667 ||| ||||| || ||||| || Sbjct 773870 CATCTTCCAGCCGCCGGACAG 773890 Score = 120 bits (132), Expect = 6e-22 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 319807 GACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCT 319866 || ||||||| ||||| |||||||| | || || || ||| | ||||| || Sbjct 774033 GAGCCGTCGATGTCGTGCTCCACGTACACGGTGCGCAGCACGTCCTTGGGCGGGAAGCCG 774092 Query 319867 TCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCA 319926 || | ||||||||| |||| ||||||||||| || || || ||| | ||||| || || Sbjct 774093 TCCACCTGGCCGTTGGCAATGGCGCGCATCAGCGTGGACTTGCCCACGCCGTTGGGGCCG 774152 Query 319927 CACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGC-GTGTTGTTCAGAAGAATTTT 319985 ||||| ||||||||| || || |||||| | | ||| | |||||| || ||||| || Sbjct 774153 CACAGGCCGTAGCGGCGGCCACGCTTCAGG-CGCAGCGCGGCGTTGTTGAGCAGAATCTT 774211 Query 319986 TCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 |||| || ||||| || || || || | ||||| ||||| || Sbjct 774212 GGCACCGTACGCCAGCGAGAACTCGCAGTTGCACAGCTCCTCGCC 774256 >seq1556 Length=6494944 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1728988 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1729047 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 1729048 CCCCACATTGGGC 1729060 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1730807 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1730748 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 1730747 CCCCACATTGGGC 1730735 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 4645552 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4645493 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 4645492 CCCCACATTGGGC 4645480 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 4648830 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4648889 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 4648890 CCCCACATTGGGC 4648902 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 4814063 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4814122 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 4814123 CCCCACATTGGGC 4814135 >seq1521 Length=1102575 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 723278 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 723337 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 723338 CCCACATTGGGC 723349 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 724472 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 724531 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 724532 CCCACATTGGGC 724543 >seq1505 Length=619805 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800 |||| |||| || | || || ||| ||| || || |||||||||| || || ||||| Sbjct 184861 CGTGTAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGCCGCGTGCCGAACTG 184920 Query 281801 ACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGAC 281860 ||| || || | ||| | ||| ||||| || ||| | ||||| ||||||||||| Sbjct 184921 ACCGCTGGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGCGCCAGGTTGAC 184980 Query 281861 GATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATA 281917 ||| || | || |||| |||||||| ||||||||||| ||||| || || Sbjct 184981 GATGGTGCTGGCCAGGCTGCCCTCGCCGTGGTGGTAGGCGCTGTGCTCGGCCACGTA 185037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057802883849540