Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1546 178 1e-39 seq1535 125 7e-24 seq1491 120 3e-22 seq1555 93.3 4e-14 seq1505 91.5 2e-13 >seq1546 Length=2252224 Score = 178 bits (196), Expect = 1e-39 Identities = 139/166 (84%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 |||||||||||||||||||||||||| |||||| | ||||| || ||| ||| | || Sbjct 2099995 GAGCGCCTGGTGGCCTTCGCGGCCGTGGAGGGCATTTTCTTCTCCGGCTCGTTCTGCTCC 2099936 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| |||||||||||||||||||| || ||| ||||||||||||| Sbjct 2099935 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATC 2099876 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 | | |||||||| ||||| |||||||| ||||| ||||||||| Sbjct 2099875 AGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTCA 2099830 Score = 143 bits (158), Expect = 3e-29 Identities = 142/181 (78%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||||||| |||||||||| || |||||||||||||||||||| || | ||||| ||| Sbjct 1078897 TTCATCAAGTACGTGCTGGCATTCTTCGCCGCCAGCGACGGCATTGTGATGGAGAACCTG 1078956 Query 116804 GTCGAGCGTTTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 | | ||| ||| | || || | |||||| | |||||||| |||||||||||| || Sbjct 1078957 GCGGCGCGCTTC-ATGAGCGACATCCAGGTGCCGGAGGCGCGCGCCTTCTACGGCTTCCA 1079015 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922 |||||||||||||||||||||| || ||||| ||| || | ||| |||||||| Sbjct 1079016 GATCGCCATGGAGAACGTGCACAGCGAGATGTACTCGGTGCTGCTGGACCACTACGTGCG 1079075 Query 116923 C 116923 | Sbjct 1079076 C 1079076 Score = 129 bits (142), Expect = 6e-25 Identities = 180/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| |||||||| | || || || ||| ||||||| |||||||| |||||| Sbjct 1079397 TGTTCGACGCCATCCACACCATCCCCACCGTGGCTAAGAAGGCGGAGTGGGCCATGCGCT 1079456 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | | | || |||| ||||||||||||| |||||| ||| |||| Sbjct 1079457 GGATCAGCTCCTCCAA---CGTGTTCGCGGAGCGCCTGGTGGGCTTCGCCTGCGTGGAGG 1079513 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || || ||| || ||| ||| | |||| || ||| | ||||| ||| |||| |||| Sbjct 1079514 GCATCCACTTCTCCGGCTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGCTGCCTGATGC 1079573 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || ||| | ||| ||||| ||||||| | |||||||||| ||||| |||||||| | Sbjct 1079574 CGGGGCTGTCCTTCTCCAACGTGCTCATCAGCCGGGACGAGGGCCTGCACTGCGACTTCG 1079633 Query 117186 CCTGTTTGCTGT 117197 | || | |||| Sbjct 1079634 CGTGCTGCCTGT 1079645 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 116681 GAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGC 116740 |||||||| |||||| | | |||| || |||||||| || ||| ||||||| Sbjct 2100654 GAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTGTCGGACGGCGAGCGC 2100595 Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || ||||| ||| || |||||||| |||||||| ||||||||||||||| ||||| Sbjct 2100594 CACTTCATTTCGCATGTTCTGGCCTTCTTCGCCGCTAGCGACGGCATCGTCCTGGAGAAC 2100535 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 |||| | || ||| ||||||||||| || |||||| Sbjct 2100534 CTGGCCATCCGCTTCATGAAGGAGGTGCAGCTGCCCGAGG 2100495 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 ||||||||| | ||||| || || ||||| | || |||||| ||| ||| || | Sbjct 2099596 CGCGCGTCAAGCAGATCATCGTGGAGGCGGTGGAGATTGAGCAGGAGTTCTGCACGGAGG 2099537 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||||||| ||| | || | || || |||| |||| |||||| |||| | Sbjct 2099536 CGCTGCCGGTGGACCTGATCGGCATGAACAGCCGCCTGATGGCGCAGTACATCCAGTTTG 2099477 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | || ||| | |||||| | ||||| | |||| ||||| |||||| | |||||| Sbjct 2099476 TGGCGGACCGCCTGCTGGTGTCGCTGGGCTGCGCTAAGCAATACAACGTGGTCAACCCCT 2099417 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | || || ||| | | ||||| Sbjct 2099416 TCGAGTTCATGGAGATGATCTC 2099395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||||| ||| ||| || ||||| || | ||||| | Sbjct 2100856 GAGCCCCTGCTGGACGAGAACCCCGACCGCTTCTGCATGTTCCCTATTAAGTACCCTCAG 2100797 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGAC 116676 || ||| |||||||| ||||||||||||||||||||||| Sbjct 2100796 ATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGAC 2100756 >seq1535 Length=1731330 Score = 125 bits (138), Expect = 7e-24 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| |||||||||| || || || | ||||||||| |||||||| |||| ||| Sbjct 1340588 GGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1340529 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||| ||||| || ||| ||||| || || Sbjct 1340528 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGG 1340469 Query 40912 GGCG 40915 ||| Sbjct 1340468 TGCG 1340465 >seq1491 Length=442363 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 109708 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 109767 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 109768 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 109827 Query 40912 GGCGGC 40917 || ||| Sbjct 109828 GGTGGC 109833 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 110091 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 110150 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 110151 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 110210 Query 40912 GGCGGC 40917 || ||| Sbjct 110211 GGTGGC 110216 >seq1555 Length=3824292 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||| |||| |||||||||| || ||||||| ||| ||||| |||||||| || Sbjct 244416 CAAGGAGGGCCTCCCGCCGGACCAGCAGCGCCTCATCTCCGCCGGCAAGCAGCTGGAGGA 244357 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || |||||||| ||||||||||| | | ||| | ||||| || Sbjct 244356 CGGCCGCACCCTGGCTGACTACAACATACTGGAGGGGTCCACGGTG 244311 >seq1505 Length=619805 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 502988 GGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 502929 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||||||||||||||||| Sbjct 502928 ACCCTGGCGGACTACAACATCCAGAAGG 502901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209166106080