Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1501 145 7e-30 >seq1501 Length=566706 Score = 145 bits (160), Expect = 7e-30 Identities = 309/459 (67%), Gaps = 7/459 (2%) Strand=Plus/Minus Query 22142 TTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATC 22201 |||||||| || || |||||||| ||||| || ||| | ||| ||||| || || | | Sbjct 386092 TTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGC 386033 Query 22202 GACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCG 22261 || |||| || ||| | | || | |||| |||| ||||| ||| ||||| || Sbjct 386032 GAGGTCAGCTTGCCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCA 385973 Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321 || | || || || ||||||||||| | | || || ||| | || ||||| || Sbjct 385972 ATGTAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACC 385913 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381 ||||||||||| | ||| ||| || ||| || | | | | ||||| ||||| Sbjct 385912 GTCTTGTACAGCCCCTTGAGCTCCTCGGGGATC---TCCAGCTCCAGCACGGAGCCGTTC 385856 Query 22382 TTGTGTATGATCAAATTTTTAA--TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTT 22439 | | | || || | ||| || ||| | || ||| | ||| || | Sbjct 385855 GCCGCCACCAGCTCGTTCTTCAGGTCGG--CGGACCAGATGCCCATGCGGTTCAGGTCGT 385798 Query 22440 TGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | ||| || |||| ||||| ||||||||||||| |||||||| ||| |||| Sbjct 385797 GCAGCAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGT 385738 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 | || ||| | || || || | || ||||| ||||| ||||| | ||| || ||||| | Sbjct 385737 TCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGG 385678 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT 22598 |||| || |||| ||| |||||||| | || |||||||| Sbjct 385677 GCATGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCT 385639 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || || || || ||||| || |||||||||| |||||||||||| ||||||| || Sbjct 384381 CATGAACAGGTCGGGGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTT 384322 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| |||||| || |||| ||||| |||||||| || ||||| ||||| | ||| Sbjct 384321 GCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCATGTA 384262 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 | ||| || |||||| | ||| ||||||||| || || || Sbjct 384261 GATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACATA 384217 Score = 118 bits (130), Expect = 9e-22 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| | ||| || || || || ||| ||||| || ||||||| || |||| Sbjct 384935 GTGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 384876 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||| || || ||||| |||||||| |||||||| || |||| ||||| ||||| Sbjct 384875 TTGGACTTGCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTGG 384816 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC-ACGTCGCACGTACCTGCCTTC 23241 | ||| | ||| || ||||| ||| ||| | || ||| || || | | ||| || Sbjct 384815 GCCTCCAGGATGGCAAACCACAGCTGCTGCGCGCGCACCACGCGGCGCG-AGCGGCCCTC 384757 Query 23242 TTCCTCGTACTTTTGGTACAACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGG 23300 | ||||||||| |||||| ||| ||||| || |||| | |||||||||||||||| Sbjct 384756 CTGCTCGTACTTGAGGTACAG-GCGCTCAAACTCCTCACCCCAGCAGTCGGCCAGGCCGG 384698 Query 23301 GCG 23303 ||| Sbjct 384697 GCG 384695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757718699360