Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1546 120 4e-22 >seq1546 Length=2252224 Score = 120 bits (132), Expect = 4e-22 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||||||||||| |||||||| | || || || |||||||| Sbjct 2099832 AACAGCATGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAG 2099891 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCC 50069 || ||||| |||||||| ||||| ||||| || ||||| || ||||| ||| || || || Sbjct 2099892 AAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAACGAGCC 2099950 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 || ||||| || || || || || || ||||| || || | ||| Sbjct 2099951 GGAGAAGAAAATGCCCTCCACGGCCGCGAAGGCCACCAGGCGCTC 2099995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254811715120