Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1546 107 3e-18 >seq1546 Length=2252224 Score = 107 bits (118), Expect = 3e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||||||||||| ||||| || | || || | |||||||| Sbjct 2099832 AACAGCATGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAG 2099891 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCC 42174 || ||||| |||||||| ||||| ||||| || ||||| || || || ||| || || || Sbjct 2099892 AAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAACGAGCC 2099950 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 || ||||| || || || || ||||| ||||| Sbjct 2099951 GGAGAAGAAAATGCCCTCCACGGCCGCGAAGGC 2099983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671126129564080