Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1501 136 6e-27 seq1546 120 5e-22 >seq1501 Length=566706 Score = 136 bits (150), Expect = 6e-27 Identities = 194/271 (72%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||||||| | |||||| || | | ||||| ||| |||| |||||||| || |||||| Sbjct 384670 TGGAGCCTGTTCTGCCCCAACGAGGCGCCCGGCCTGGCCGACTGCTGGGGTGAGGAGTTT 384729 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| | |||| |||||||| |||||||| | | | || || | ||| || Sbjct 384730 GAGCGCCTGTACCTCAAGTACGAGCAGGAGGGCCGCTC---GCGCCGCGTGG-TGCGCGC 384785 Query 97176 GAA----CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | |||||| |||||| || ||| ||||| ||||| || | || ||||| || Sbjct 384786 GCAGCAGCTGTGGTTTGCCATCCTGGAGGCCCAGGTGGAGACCGGCAACCCCTACATGCT 384845 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||| | || ||||| |||||| | || |||||||||||||| |||| Sbjct 384846 GTACAAGGACCACTGCAACCGCAAGTCCAACCAGCAGAACCTGGGCACCATCAAGTGCTC 384905 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 ||| ||||||||||| ||| | |||||| || Sbjct 384906 CAACCTGTGCACGGAGATTATCGAGTACACC 384936 Score = 111 bits (122), Expect = 2e-19 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAG--ACGCTGATCGATATGGCTGCCGACAGAG 98097 |||||||| || |||||||| | | || |||||| | || ||||| |||||| | | Sbjct 385905 TACAAGACGGTGTGGGAGAT--CAAGCAGCGCACGCTGGTGGACATGGCCGCCGACCGCG 385962 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 | | ||||||||||||||| || ||||| ||| | | |||| |||| || | Sbjct 385963 GCGCCTACATTGACCAGAGCCAGAGCTTCAACGTGTTCATGCCCGACCCCAACTTTGGCA 386022 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 |||| ||| | ||||| ||||| ||| ||||||||||||||| ||||||||||| | Sbjct 386023 AGCTGACCTCGCTGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACC 386082 Query 98218 TGAGAACAAAGT 98229 || | || |||| Sbjct 386083 TGCGCACCAAGT 386094 >seq1546 Length=2252224 Score = 120 bits (132), Expect = 5e-22 Identities = 117/148 (79%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTT 125485 |||||||| ||||| ||||| |||||||| ||||| || || | ||| ||| ||||||| Sbjct 2099989 CTGGTGGCCTTCGCGGCCGTGGAGGGCATTTTCTTCTCCGGCTCGTTCTGCT-CCATCTT 2099931 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||||| ||||||||||| || || | |||||| | || || Sbjct 2099930 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCCG 2099871 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||||||||| ||||| ||||| ||| Sbjct 2099870 CGACGAGGGCCTGCACTGCGACTTCGCC 2099843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044767872080