Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1550 82.4 5e-11 >seq1550 Length=2811283 Score = 82.4 bits (90), Expect = 5e-11 Identities = 115/154 (75%), Gaps = 7/154 (5%) Strand=Plus/Minus Query 44396 CACCCAG-AGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACATGCGG-A 44452 ||||| | || ||||||||||||| |||||| |||||| || ||||| || ||||| | Sbjct 316818 CACCCCGCAGGTGGGCGACAAGTTCGCGTCGCGGCACGGC-CAGAAGGGCACGTGCGGCA 316760 Query 44453 GC-CGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCAT 44511 | ||| | ||| |||||||||||||||| | | || | ||||| ||| |||| Sbjct 316759 TCACGTAC--ACCATGGAGGACATGCCCTTCACCGCCGAGGGCATCGTGCCGGACATCAT 316702 Query 44512 CATCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 | ||||||| |||||| | ||| | | |||||| Sbjct 316701 CGTCAACCCGCACGCCATCCCCAGCCGCATGACC 316668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340131141424734