Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq1173 116 1e-21 >seq1173 Length=8897 Score = 116 bits (128), Expect = 1e-21 Identities = 233/339 (69%), Gaps = 20/339 (6%) Strand=Plus/Minus Query 23312 CCGCAGCCCGCGCCGAAGAACAACGCCGCACTGCGGCCCAATCGGAGAACGCAAAAGATG 23371 |||| || ||||||||||||||||||||||| ||||| ||| |||||| || || | || Sbjct 2821 CCGC-GCGCGCGCCGAAGAACAACGCCGCACCGCGGCACAAACGGAGATTGCGAATGCTG 2763 Query 23372 CGAACAAACAACGCACCGCGGCGCTCGCAGATGCTTTTGCTGCTCGCGCTGCCGCTGGCA 23431 |||| || | | | | |||| || ||||| || |||||| ||| || |||| Sbjct 2762 CGAAGAAGGATGCCGACACTGCGCGGGCTGATGCCTTGGCTGCTGGCGACGCTGCTGAGC 2703 Query 23432 GCCTGCAGCAGCGCGTCGATCAGCTCGTCGCAGCCGCCC--GCC-------ATCCCGCCG 23482 | ||| |||||| ||| | | || |||| ||||||| ||| || |||||| Sbjct 2702 GGTTGCGGCAGCGTGTCAACGAACTACTCGCCGCCGCCCGAGCCGGCAAGGATACCGCCG 2643 Query 23483 CTTCCACCGGAAGCCCGG------CAGCCGGCGACGCCCTTGATCTGCTTGCCGACGTGT 23536 || || ||| ||| || ||| || ||| |||| ||| |||| | ||||||| Sbjct 2642 CTGCCGGCGGTGGCCAGGACAAGCCAGGTGGAGACCCCCTCGATGTGCTCGTCGACGTGC 2583 Query 23537 TCGGCCGCGCTGA-CGAACGCGCGGGTGAGCTGGCAGCGTACGCTGACGCCGCCCGCA-T 23594 ||||||| |||| || || |||| ||||| | ||||| ||| | || | | | Sbjct 2582 TCGGCCGGTCTGACCGTAC-TTCGGGAATCCTGGCTGACTACGCCGAC-CGGCTCAAAGT 2525 Query 23595 CGCCGGCCGGCAGTGCGAACGCGACTACGACGCGCTGAC 23633 |||||| | ||||| || | ||||| |||||||| Sbjct 2524 CGCCGGGCTCTCCTGCGAGCGGAATTACGATGCGCTGAC 2486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135603891112092