Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1558 677 0.0 >seq1558 Length=203828 Score = 677 bits (750), Expect = 0.0 Identities = 765/1025 (75%), Gaps = 0/1025 (0%) Strand=Plus/Minus Query 137861 ATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTC 137920 ||||||||||| | ||||||||| || | ||| || || ||||| || |||||||| Sbjct 175594 ATGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 175535 Query 137921 TGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAAC 137980 || || |||| || || |||||| || || | ||||| ||| | ||||| || || Sbjct 175534 AGGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTAC 175475 Query 137981 GTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTT 138040 || ||||| ||||| || || || || || || ||| | ||||| ||| || Sbjct 175474 TTTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 175415 Query 138041 CCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 138100 | | |||||||||||||| || |||||| | ||||| ||| |||||||| | |||| Sbjct 175414 CTTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTG 175355 Query 138101 GGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTT 138160 |||||| || ||||||| ||| || || |||| |||||||| || | ||| | || Sbjct 175354 GGGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATT 175295 Query 138161 TGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTC 138220 || || | ||||| || ||| || | ||||| ||||||||||| |||||||| || | Sbjct 175294 CGTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 175235 Query 138221 TCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTT 138280 |||| ||| | | ||||| ||||||||||| || ||||| | || || ||||| || Sbjct 175234 TCGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATT 175175 Query 138281 CGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTT 138340 ||| || ||||| || || || || |||||||| ||||||||||||| || || Sbjct 175174 CGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTT 175115 Query 138341 TGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCT 138400 ||||| || || |||||||| ||| | || ||| | || |||||||| |||||||| || Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 138401 CAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTAT 138460 ||||| || || |||||||| || || ||| || | |||| |||| | | |||||||| Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 138461 TCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAA 138520 ||| |||||||| || ||||| || || | ||||| || || | || || || Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 138521 AGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTG 138580 ||||| | ||||| || | |||||||| || || ||||||||||||||||||| ||| Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 138581 GTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTT 138640 ||| |||||||| || ||||||| ||| || ||||||||||||||||| ||| | || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 138641 TGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCT 138700 ||||| || | ||||| |||| ||| ||||||| || | ||| | ||||| ||| | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 138701 ACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGAC 138760 ||| || || || |||||||| ||||| |||||||| || ||||| ||||||||||| || Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 138761 CTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGA 138820 |||||||| || ||||||||||| || |||||| | ||||| ||||||||| || || Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 138821 TCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTG 138880 ||||| |||||| || || || |||||||||||||| ||| | || |||||||| | Sbjct 174634 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATA 174575 Query 138881 ATATA 138885 ||||| Sbjct 174574 ATATA 174570 Score = 214 bits (236), Expect = 2e-50 Identities = 196/248 (79%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 136080 ATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTAC 136139 |||||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||| Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 136140 ACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTA 136199 |||| ||| | ||||||||||| || ||||||| ||||| |||| | || |||| | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 136200 CGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTC 136259 | ||||| |||||| | || || |||||||||||||| || | ||| || |||||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 136260 GTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGC 136319 ||||||| ||||| |||||||| | | || |||||| | |||||||| || |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 136320 ACGAGCGT 136327 |||||||| Sbjct 48839 ACGAGCGT 48832 Score = 214 bits (236), Expect = 2e-50 Identities = 196/248 (79%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 136080 ATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTAC 136139 |||||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||| Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 136140 ACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTA 136199 |||| ||| | ||||||||||| || ||||||| ||||| |||| | || |||| | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 136200 CGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTC 136259 | ||||| |||||| | || || |||||||||||||| || | ||| || |||||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 136260 GTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGC 136319 ||||||| ||||| |||||||| | | || |||||| | |||||||| || |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 136320 ACGAGCGT 136327 |||||||| Sbjct 145364 ACGAGCGT 145371 Score = 192 bits (212), Expect = 7e-44 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| |||| | || ||||| |||||||||||||| || ||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || ||||||||||| || |||||||| || ||||||||||| | ||||| |||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || ||| | || || || | | | ||||| || ||||| ||||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 136081 |||||| ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 192 bits (212), Expect = 7e-44 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| |||| | || ||||| |||||||||||||| || ||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || ||||||||||| || |||||||| || ||||||||||| | ||||| |||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || ||| | || || || | | | ||||| || ||||| ||||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 136081 |||||| ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 174 bits (192), Expect = 2e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 135506 GACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGT 135565 || || ||||| ||||| ||| | |||||||| | ||||| || |||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 135566 GCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCT 135625 ||||| ||||| || ||||| ||||| ||||||||||| || || |||||||||||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 135626 TCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTT 135685 ||||| || |||||| |||| || ||||||||||| ||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 135686 ATCGGTGTCTTCTCTTACATGGGT 135709 | ||||| | || ||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 174 bits (192), Expect = 2e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 135506 GACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGT 135565 || || ||||| ||||| ||| | |||||||| | ||||| || |||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 135566 GCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCT 135625 ||||| ||||| || ||||| ||||| ||||||||||| || || |||||||||||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 135626 TCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTT 135685 ||||| || |||||| |||| || ||||||||||| ||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 135686 ATCGGTGTCTTCTCTTACATGGGT 135709 | ||||| | || ||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 135710 CGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCA 135769 || ||||||||| | |||| ||| | |||||||| || ||||| ||| ||||||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 135770 GCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTC 135829 || || || || || ||| | ||||| ||| | || ||||| | || |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 135830 AGTGATGGTATGCC 135843 ||| |||||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 135710 CGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCA 135769 || ||||||||| | |||| ||| | |||||||| || ||||| ||| ||||||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 135770 GCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTC 135829 || || || || || ||| | ||||| ||| | || ||||| | || |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 135830 AGTGATGGTATGCC 135843 ||| |||||||| Sbjct 141955 TCTGACGGTATGCC 141968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627955770323200