Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1558 199 1e-46 >seq1558 Length=203828 Score = 199 bits (220), Expect = 1e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 || ||||||||| | ||||||||||| ||||||||||| || | ||||| ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTAT 19946 || ||| |||||||| || | ||| ||||||||||| | | ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 19996 || || ||||| ||||| ||||| || || || ||||| ||||| || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 199 bits (220), Expect = 1e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 || ||||||||| | ||||||||||| ||||||||||| || | ||||| ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTAT 19946 || ||| |||||||| || | ||| ||||||||||| | | ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 19996 || || ||||| ||||| ||||| || || || ||||| ||||| || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 131 bits (144), Expect = 5e-26 Identities = 198/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 19998 GGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACAT 20057 || |||||||| | | || || ||||| ||||||||||| || |||||||| ||||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 20058 TTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACT 20117 ||||| | ||| ||| || || | || || ||| | || | | || | | ||| Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 20118 ATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-ACGGAAA 20176 ||||| |||||| | || ||||| ||||| ||||| |||||||| || ||| | || Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA-CTCACAAGGTCG 48899 Query 20177 GATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCA 20236 || | || ||||| || | | || | |||||| | || | ||||| ||||| Sbjct 48898 TGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 48839 Query 20237 CGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTC 20275 |||||| || ||||| |||||||| || || |||||||| Sbjct 48838 CGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 48800 Score = 131 bits (144), Expect = 5e-26 Identities = 198/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 19998 GGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACAT 20057 || |||||||| | | || || ||||| ||||||||||| || |||||||| ||||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 20058 TTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACT 20117 ||||| | ||| ||| || || | || || ||| | || | | || | | ||| Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 20118 ATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-ACGGAAA 20176 ||||| |||||| | || ||||| ||||| ||||| |||||||| || ||| | || Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA-CTCACAAGGTCG 145304 Query 20177 GATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCA 20236 || | || ||||| || | | || | |||||| | || | ||||| ||||| Sbjct 145305 TGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 145364 Query 20237 CGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTC 20275 |||||| || ||||| |||||||| || || |||||||| Sbjct 145365 CGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 145403 Score = 125 bits (138), Expect = 2e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 19422 GATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGA 19481 ||||| || ||||| |||||||| || || | | ||||| ||||| || ||| | || Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 19482 GCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGC 19541 || ||| | |||| || || ||||| || || ||||| || || || |||||||| | Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 19542 ACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTA 19601 || |||| ||||||||||||||||| ||||| || |||||| | || | |||||| | Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 19602 ATAGGAGTA 19610 |||| ||| Sbjct 53804 CTAGGTGTA 53796 Score = 125 bits (138), Expect = 2e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 19422 GATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGA 19481 ||||| || ||||| |||||||| || || | | ||||| ||||| || ||| | || Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 19482 GCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGC 19541 || ||| | |||| || || ||||| || || ||||| || || || |||||||| | Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 19542 ACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTA 19601 || |||| ||||||||||||||||| ||||| || |||||| | || | |||||| | Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 19602 ATAGGAGTA 19610 |||| ||| Sbjct 140399 CTAGGTGTA 140407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144438927649848