Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1558 219 7e-52 >seq1558 Length=203828 Score = 219 bits (242), Expect = 7e-52 Identities = 187/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 |||||||| ||| ||||||||| ||| | |||||||| |||||||||| ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 |||||| | ||||| || || | ||||||||||| |||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACAT 212277 |||||| ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 219 bits (242), Expect = 7e-52 Identities = 187/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 |||||||| ||| ||||||||| ||| | |||||||| |||||||||| ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 |||||| | ||||| || || | ||||||||||| |||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACAT 212277 |||||| ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 167 bits (184), Expect = 4e-36 Identities = 209/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 212276 ATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTAC 212335 |||| ||||| ||| | || |||||||| || || || ||||||||| | |||| Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 212336 ACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCA 212395 |||||||| | || | ||||| || ||| || | ||||| || || | ||| | | | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 212396 CAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTA 212455 | |||||||||||| |||| || |||||||||||||||||||| || || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 212456 AGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGC 212515 || | ||||||| || | | ||| | || ||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 212516 ACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAAC 212562 |||| | || || ||||||||||| || |||||||| || ||||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAAC 48793 Score = 167 bits (184), Expect = 4e-36 Identities = 209/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 212276 ATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTAC 212335 |||| ||||| ||| | || |||||||| || || || ||||||||| | |||| Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 212336 ACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCA 212395 |||||||| | || | ||||| || ||| || | ||||| || || | ||| | | | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 212396 CAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTA 212455 | |||||||||||| |||| || |||||||||||||||||||| || || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 212456 AGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGC 212515 || | ||||||| || | | ||| | || ||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 212516 ACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAAC 212562 |||| | || || ||||||||||| || |||||||| || ||||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAAC 145410 Score = 149 bits (164), Expect = 1e-30 Identities = 115/137 (84%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 |||||||| | || | |||||||||||||||||| |||||| ||| ||||| ||||| | Sbjct 52364 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 52305 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 | ||| | ||||||| ||||||||| | |||||||| |||| || ||||||||||| | Sbjct 52304 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 52245 Query 212030 ACGGTATGCCTTTAGGT 212046 ||||||||||||||||| Sbjct 52244 ACGGTATGCCTTTAGGT 52228 Score = 149 bits (164), Expect = 1e-30 Identities = 115/137 (84%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 |||||||| | || | |||||||||||||||||| |||||| ||| ||||| ||||| | Sbjct 141839 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 141898 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 | ||| | ||||||| ||||||||| | |||||||| |||| || ||||||||||| | Sbjct 141899 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 141958 Query 212030 ACGGTATGCCTTTAGGT 212046 ||||||||||||||||| Sbjct 141959 ACGGTATGCCTTTAGGT 141975 Score = 136 bits (150), Expect = 6e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 211702 GACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGT 211761 || || |||||||||||||| | ||||| | | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 211762 GCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCA 211821 || || | ||| |||| |||||||||||| | |||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 211822 ACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCA 211859 |||| || |||||| | ||||| |||||||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 53827 Score = 136 bits (150), Expect = 6e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 211702 GACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGT 211761 || || |||||||||||||| | ||||| | | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 211762 GCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCA 211821 || || | ||| |||| |||||||||||| | |||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 211822 ACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCA 211859 |||| || |||||| | ||||| |||||||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 140376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807539472862480