Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1558 522 3e-143 >seq1558 Length=203828 Score = 522 bits (578), Expect = 3e-143 Identities = 719/1009 (71%), Gaps = 21/1009 (2%) Strand=Plus/Minus Query 171824 AGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGC 171883 ||| |||||||||||| | || ||||| ||| | ||||| || |||||||||||| | || Sbjct 175561 AGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATTCCCTTGTGCTTACTTTGC 175502 Query 171884 AATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGC 171943 | | || |||||||| || ||||||||||| || |||||||| || |||||| | || Sbjct 175501 ATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATGGTATACGCATGGTTTAGC 175442 Query 171944 ATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGC 172003 | || || | || || ||||| ||||| ||||| || || ||||||| | | Sbjct 175441 TACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCTACACCTGCTAACAG 175382 Query 172004 TATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATG 172063 ||||| ||| ||| | || | ||||| || || || ||||| ||| | || || Sbjct 175381 TATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAAGGTGATTTCACTCGTTG 175322 Query 172064 GTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGG 172123 || |||| | ||||| ||||| || || || ||||| || | ||||| | || || Sbjct 175321 GTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGGTGCATTTGGTTTAATTGG 175262 Query 172124 TTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACT 172183 |||||||||| | |||||||| ||||| | || ||||||| ||||||||| | Sbjct 175261 TTTCATGCTTCGTCAGTTTGAAATTGCTCGTTCAGTAAACTTACGTCCATACAACGCAAT 175202 Query 172184 AGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCA 172243 || ||||||||| ||||| |||||| | || ||||| || ||||||||||| Sbjct 175201 TGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCA 175142 Query 172244 GCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATT 172303 |||||||||| |||||| || ||||| || || ||||| |||| |||||||| Sbjct 175141 ATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATT 175082 Query 172304 CATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTAT 172363 | | || ||||||||||| || ||||| ||||| || ||||||||||| || ||| | Sbjct 175081 CTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGTGTTGCTGGTGT 175022 Query 172364 ACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGA 172423 | |||| || ||| ||||||| || || ||||| || || | |||||||| | || Sbjct 175021 TTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTCGA 174962 Query 172424 AGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCC 172483 || || ||| ||| ||| || ||| | |||||| | || Sbjct 174961 AG------------ACGGTGACGGT---------GCTAACACATTCCGTGCATTCAACCC 174923 Query 172484 TACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATT 172543 |||||||| |||||||| || |||| ||||||||||| | ||||||||||| || || Sbjct 174922 TACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTT 174863 Query 172544 TGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCAT 172603 ||| | || || || |||||| | | | |||||| | ||||| || || || || | Sbjct 174862 CGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAAC 174803 Query 172604 GGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGA 172663 ||| | |||| |||| ||| | |||||| | || || ||| | | || ||||| Sbjct 174802 TGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGA 174743 Query 172664 CTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAA 172723 ||| ||||| |||||||| | || || |||||||| || || ||||| ||||||||||| Sbjct 174742 CTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAA 174683 Query 172724 GAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGA 172783 |||||||||||||| |||||||| | || |||||| | || || ||||| || || Sbjct 174682 AAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA 174623 Query 172784 GAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || || ||||| |||||||| || ||||| || ||||| |||||| Sbjct 174622 ACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAA 174574 Score = 194 bits (214), Expect = 2e-44 Identities = 184/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 171143 ATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCAC 171202 ||||| ||||| |||||||||||| |||| |||||||||||||||||||| || |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 171203 CCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCAC 171262 || ||||| ||| |||||| || ||| | ||||||||| | ||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 171263 GGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA--AAACT 171320 |||||| |||| || || ||| ||||| | || |||||||| ||| || ||| ||| Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAAC--GAATCAGCTAACG 50951 Query 171321 ACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCAT 171373 | || || ||||| |||||||||||||| || |||||||| ||||||||| Sbjct 50950 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 194 bits (214), Expect = 2e-44 Identities = 184/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 171143 ATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCAC 171202 ||||| ||||| |||||||||||| |||| |||||||||||||||||||| || |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 171203 CCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCAC 171262 || ||||| ||| |||||| || ||| | ||||||||| | ||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 171263 GGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA--AAACT 171320 |||||| |||| || || ||| ||||| | || |||||||| ||| || ||| ||| Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAAC--GAATCAGCTAACG 143252 Query 171321 ACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCAT 171373 | || || ||||| |||||||||||||| || |||||||| ||||||||| Sbjct 143253 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 188 bits (208), Expect = 8e-43 Identities = 219/294 (74%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 171372 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTAC 171431 |||| ||||| ||| | |||||||||| || || || |||||||||||||||||||||| Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 171432 ACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTA 171491 |||||||| | |||| | || ||| || || | ||||| || || | ||| | | | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 171492 CAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAA 171551 | |||||||||||| | ||||| |||||||||||||||||||| ||||| || | || Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGG-- 48902 Query 171552 AGATTGTACCA---ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTA 171608 ||||| | || |||| ||| | | ||| | || ||| | || |||||||| | Sbjct 48901 -TCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAA 48843 Query 171609 TGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTA 171662 |||| || | || || ||||||||||| |||||| |||| || || | |||| Sbjct 48842 TGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAACTCTA 48789 Score = 188 bits (208), Expect = 8e-43 Identities = 219/294 (74%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 171372 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTAC 171431 |||| ||||| ||| | |||||||||| || || || |||||||||||||||||||||| Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 171432 ACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTA 171491 |||||||| | |||| | || ||| || || | ||||| || || | ||| | | | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 171492 CAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAA 171551 | |||||||||||| | ||||| |||||||||||||||||||| ||||| || | || Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGG-- 145301 Query 171552 AGATTGTACCA---ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTA 171608 ||||| | || |||| ||| | | ||| | || ||| | || |||||||| | Sbjct 145302 -TCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAA 145360 Query 171609 TGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTA 171662 |||| || | || || ||||||||||| |||||| |||| || || | |||| Sbjct 145361 TGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAACTCTA 145414 Score = 154 bits (170), Expect = 2e-32 Identities = 161/206 (78%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 170798 GACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGG 170856 || || ||| | ||||||||| | |||||| ||||| || |||||||||||||| | || Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAACATCATTACAGG 53926 Query 170857 TGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGC 170916 ||||||| | ||| |||| |||||||| || | |||||||| || || |||||||| || Sbjct 53925 TGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 53866 Query 170917 CACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCT 170976 || | ||||||||||| |||||||| ||||||||||| | | ||| |||||||| Sbjct 53865 TTCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 53806 Query 170977 TATTGGAATCT-CTGCCTACATGGGT 171001 | | || | | ||| |||||||||| Sbjct 53805 TCTAGGTGTATACTG-CTACATGGGT 53781 Score = 154 bits (170), Expect = 2e-32 Identities = 161/206 (78%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 170798 GACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGG 170856 || || ||| | ||||||||| | |||||| ||||| || |||||||||||||| | || Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAACATCATTACAGG 140277 Query 170857 TGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGC 170916 ||||||| | ||| |||| |||||||| || | |||||||| || || |||||||| || Sbjct 140278 TGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 140337 Query 170917 CACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCT 170976 || | ||||||||||| |||||||| ||||||||||| | | ||| |||||||| Sbjct 140338 TTCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 140397 Query 170977 TATTGGAATCT-CTGCCTACATGGGT 171001 | | || | | ||| |||||||||| Sbjct 140398 TCTAGGTGTATACTG-CTACATGGGT 140422 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 171006 AGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCAC 171065 |||||||| |||| | | | |||| ||| | || ||||| |||||| |||||||| | Sbjct 52364 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 52305 Query 171066 CTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 171125 | ||| ||||||| | || |||||| | || || || |||| || ||||||||||||| Sbjct 52304 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 52245 Query 171126 ATGGTATGCCACTAGGT 171142 | |||||||| ||||| Sbjct 52244 ACGGTATGCCTTTAGGT 52228 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 171006 AGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCAC 171065 |||||||| |||| | | | |||| ||| | || ||||| |||||| |||||||| | Sbjct 141839 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 141898 Query 171066 CTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 171125 | ||| ||||||| | || |||||| | || || || |||| || ||||||||||||| Sbjct 141899 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 141958 Query 171126 ATGGTATGCCACTAGGT 171142 | |||||||| ||||| Sbjct 141959 ACGGTATGCCTTTAGGT 141975 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 ||||||||||||||||| ||||| | | ||||| | || |||||||||||||| Sbjct 55305 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 55246 Query 170786 CCAGTCGATATC 170797 ||||| || ||| Sbjct 55245 CCAGTAGACATC 55234 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 ||||||||||||||||| ||||| | | ||||| | || |||||||||||||| Sbjct 138898 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 138957 Query 170786 CCAGTCGATATC 170797 ||||| || ||| Sbjct 138958 CCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570257694015120