Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq1173 147 6e-31 >seq1173 Length=8897 Score = 147 bits (162), Expect = 6e-31 Identities = 236/334 (71%), Gaps = 19/334 (6%) Strand=Plus/Plus Query 23129 GTTAGCGCGTCGTAGTCGCGCTCGCACTGCTGGCCGGCGA-TGCGGGCACGGTCAGCGTA 23187 || ||||| ||||| | |||||||| | ||||||| | | || ||||| ||||| Sbjct 2486 GTCAGCGCATCGTAATTCCGCTCGCAGGAGAGCCCGGCGACTTTGAGC-CGGTCGGCGTA 2544 Query 23188 TTCCGCCAGCTCTCCCGCGCGCTCGTCAACGCGGCCGAGCACGTCGGCAAGCAGATCGAG 23247 || ||||| ||||| |||| ||||||||||||||| | |||| |||||| Sbjct 2545 GTCAGCCAGGATTCCCGAAGTACGGTCAGACCGGCCGAGCACGTCGACGAGCACATCGAG 2604 Query 23248 GGCGTCGCCGGCTG------CCGGGCTTCCGGCGGAAGTGGCGGGAT-------GGC--G 23292 || ||| || ||| || ||| ||| ||| || ||||| || ||| | Sbjct 2605 GGGGTCTCCACCTGGCTTGTCCTGGCCACCGCCGGCAGCGGCGGTATCCTTGCCGGCTCG 2664 Query 23293 GGCGGCTGCGACGAGCTGGTCGACACGCTGCTGCAGGCTGCCAGCGGCAGCACGAGCAGC 23352 |||||| |||| || | || |||||||||| ||| | |||| || | | |||||| Sbjct 2665 GGCGGCGGCGAGTAGTTCGTTGACACGCTGCCGCAACCGCTCAGCAGCGTCGCCAGCAGC 2724 Query 23353 AAAAGCATCCGCGAGCGCGGCTGTTCGT-TGTTGGTTTGCATCTTTCGCAATCTCCGATT 23411 || ||||| || |||| | ||| | | | || ||| | ||||||||||||| || Sbjct 2725 CAAGGCATCAGCCCGCGCAG-TGTCGGCATCCTTCTTCGCAGCATTCGCAATCTCCGTTT 2783 Query 23412 GGGCCGCGGTGCGGCGTTGTTCTTCGGCGCGCGC 23445 | |||||||||||||||||||||||||||||||| Sbjct 2784 GTGCCGCGGTGCGGCGTTGTTCTTCGGCGCGCGC 2817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143414946595128