Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1501 132 5e-26 seq1491 116 3e-21 seq1535 100 3e-16 seq1505 89.7 5e-13 seq1546 82.4 7e-11 >seq1501 Length=566706 Score = 132 bits (146), Expect = 5e-26 Identities = 315/469 (67%), Gaps = 9/469 (2%) Strand=Plus/Minus Query 144745 CTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTAT 144804 ||||||||||| ||||||||||| || ||||| ||| |||||| | |||| ||| | Sbjct 386093 CTTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAG 386034 Query 144805 CGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATC 144864 ||| |||| | | | |||| || | || |||| || | ||||| || || Sbjct 386033 CGAGGTCAGCTTGCCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTC 385974 Query 144865 AATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCAT-TTCATTTCCCAAG 144923 |||| | ||| ||||||||||||||| || | || ||| || || || ||||| Sbjct 385973 AATGTAGGCGCCGCGGTCGGCGGCCATGTCCACCAG-CGTGCGCTGCTTGATCTCCCACA 385915 Query 144924 CGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCT 144983 | |||||||||| | || | | || || || || | | || | | || || | Sbjct 385914 CCGTCTTGTACAGCCCCTTGAGCTCCTCGGGGATC---TCCAGCTCCAGCACGGAGCCGT 385858 Query 144984 TGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTT--GATCAAGTC 145041 | ||| | | ||||| || |||| || | ||| | | | ||| ||| Sbjct 385857 TCGCCGCCACCAGCTCGTTCTTCAGGTCGG-CG-GACCAGATGCCCATGCGGTTCAGGTC 385800 Query 145042 GTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACAC 145101 || | | || ||| ||||| || |||||||||| || ||| || |||| || | Sbjct 385799 GTGCAGCAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGAT 385740 Query 145102 GTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGT 145161 ||| || ||| |||| ||||| ||||||| ||||||||||| || | ||| | ||||| Sbjct 385739 GTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGT 385680 Query 145162 GGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATG 145210 ||||||| ||||||| | || ||||||| |||||||| | |||| Sbjct 385679 GGGCATGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTGCGCGATG 385631 Score = 111 bits (122), Expect = 1e-19 Identities = 178/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 145679 ATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTG 145738 ||||| | ||||| ||| || |||||||| ||||| || ||||| || || | | Sbjct 384923 ATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGG 384864 Query 145739 TTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT- 145797 ||||| ||||||||| |||||||| || ||| ||||||||||| | ||||| ||| Sbjct 384863 TTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTGGGCCTCCAGGATG 384804 Query 145798 -AAAACGGTGCAAGTCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTAT 145855 |||| || | |||||| |||||| || || | |||||||||| | ||||| Sbjct 384803 GCAAAC--CACAGCTGCTGCGCGCGCACCACGCGGC-GCGAGCGGCCCTCCTGCTCGTAC 384747 Query 145856 TTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTG 145915 || ||| || ||||||| | ||| |||| |||| ||||||||| || |||| Sbjct 384746 TTGAGGTACAGGCGCTCAAACTCCTCACCCCAGCAGTCGGCCAGGCCGGGCGCCTCGTTG 384687 Query 145916 GGACACATCAG 145926 || || | ||| Sbjct 384686 GGGCAGAACAG 384676 >seq1491 Length=442363 Score = 116 bits (128), Expect = 3e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | |||||||||||| || |||||||| || Sbjct 109833 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 109774 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 109773 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 109714 Query 131127 GATTCCT 131133 ||| ||| Sbjct 109713 GATGCCT 109707 Score = 116 bits (128), Expect = 3e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | |||||||||||| || |||||||| || Sbjct 110216 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 110157 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 110156 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 110097 Query 131127 GATTCCT 131133 ||| ||| Sbjct 110096 GATGCCT 110090 >seq1535 Length=1731330 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 131014 CGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTG 131073 |||| |||||||| | || | ||| |||||||| || |||||||| ||| || |||| Sbjct 1340470 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 1340529 Query 131074 CGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || |||||| ||||||||||| ||| | || | ||||||||||||||| || || ||| Sbjct 1340530 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCT 1340589 >seq1505 Length=619805 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || || |||||| |||||| ||||||||||| ||| ||| Sbjct 502901 CCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 502960 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 | | ||||||||||||||||||||| ||| Sbjct 502961 TCAGACGCTGCTGGTCCGGAGGGATGCCT 502989 >seq1546 Length=2252224 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA-GTTT 46205 ||| | ||||| |||||||||| ||| ||||||||| | || || || ||| ||| Sbjct 2100001 TTCTCGGAGCGCCTGGTGGCCTTCGCGGCCGTGGAGGGCATTTTCTTCTCCGGCTCGTTC 2099942 Query 46206 TGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 ||| ||||||| | |||| | ||| ||||||||||||| || || |||||| Sbjct 2099941 TGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 2099883 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCA 46292 ||| || ||||||||||||||||| Sbjct 2099882 GCTCATCAGCCGCGACGAGGGCCTGCA 2099856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472003607550720