Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1535 96.9 3e-15 seq1491 84.2 2e-11 >seq1535 Length=1731330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 16715 CGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTT 16774 || || | ||| |||| ||||| ||||||||||| || |||||||||||||||| ||| Sbjct 1340470 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 1340529 Query 16775 TTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 | ||||||||| || |||||||| |||| || ||||| |||||| Sbjct 1340530 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTCC 1340577 >seq1491 Length=442363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/132 (75%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 16694 TTTAGCCGCATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTT 16750 || |||||| ||||| || || || || | ||| |||| ||||| || |||||||| Sbjct 110232 TTCAGCCGC-TTTACTGGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTC 110174 Query 16751 TGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGC 16810 || ||||||||||| |||| ||| | ||||||||| || ||||| || | || || Sbjct 110173 TGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGG 110114 Query 16811 CGCTGTTGGTCC 16822 ||||| |||||| Sbjct 110113 CGCTGCTGGTCC 110102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405080308138420