Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1556 143 2e-29 seq982 143 2e-29 seq55 116 2e-21 seq646 111 1e-19 seq104 96.9 2e-15 >seq1556 Length=6494944 Score = 143 bits (158), Expect = 2e-29 Identities = 94/104 (90%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 25893 GTTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GG 25947 |||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 973709 GTTTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 973650 Query 25948 TAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||| |||||||||||||||||||||||||||| Sbjct 973649 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 973606 >seq982 Length=8053 Score = 143 bits (158), Expect = 2e-29 Identities = 94/104 (90%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 25893 GTTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GG 25947 |||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 586 GTTTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 645 Query 25948 TAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||| |||||||||||||||||||||||||||| Sbjct 646 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 689 >seq55 Length=1051 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 974 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 915 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 914 GGCAGTATTTAGCCTTA 898 >seq646 Length=3696 Score = 111 bits (122), Expect = 1e-19 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2660 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2601 Query 20007 -GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 2600 NGGCAGTATTTAGCCTTA 2583 >seq104 Length=1130 Score = 96.9 bits (106), Expect = 2e-15 Identities = 64/71 (90%), Gaps = 5/71 (7%) Strand=Plus/Plus Query 25926 TCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAA 25980 |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 1 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 60 Query 25981 TTAGATGACGA 25991 ||||||||||| Sbjct 61 TTAGATGACGA 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940839980698