Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq1505 127 3e-24 seq1550 86.0 8e-12 >seq1505 Length=619805 Score = 127 bits (140), Expect = 3e-24 Identities = 150/198 (76%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAA-TCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 ||||| |||||||| | |||| || |||||||| |||| || ||||||||| ||||| Sbjct 184862 GTGTAGATGTAGCGCGC-GCTGGCGGCGTCCTTGCCGCCCTGCAGCCGCGTGCCGAACTG 184920 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 |||| || | || || | || |||||| ||||| ||||||||||| | ||||| Sbjct 184921 ACCGCTGGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGCGCCAGGTTGAC 184980 Query 126300 AATGGT-CTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 ||||| || || |||| | ||||||||| | |||| || | ||||||||||||||| Sbjct 184981 GATGGTGCTGGC-CAGGCTGCCCTCGCCGTGGTGGTAGGCGCTGTGCTCGGCCACGTAGG 185039 Query 126359 CGCTCAGCTGCGCAACCT 126376 || |||||| || |||| Sbjct 185040 CGGACAGCTGGGCCACCT 185057 >seq1550 Length=2811283 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCT-GGTATGGCGCAAAAGGGCACGTGCGGCATGA 15107 |||| || | ||||||||||| || || | ||| || ||||||||||||||||| | Sbjct 316815 CCCGCAGGTGGGCGACAAGTTCGCGTCGCGGCACGGC-CAGAAGGGCACGTGCGGCATCA 316757 Query 15108 TTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 | | || ||| ||||||||||| ||||| ||||| ||| ||||| ||| ||| Sbjct 316756 CGTACACCATGGAGGACATGCCCTTCACCGCCGAGGGCATCGTGCCGGACATCATCGTCA 316697 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||| || |||||| |||||||||||| Sbjct 316696 ACCCGCACGCCATCCCCAGCCGCATGACCAT 316666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611380093140800