Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1558 553 2e-152 >seq1558 Length=203828 Score = 553 bits (612), Expect = 2e-152 Identities = 739/1025 (72%), Gaps = 2/1025 (0%) Strand=Plus/Minus Query 167297 TGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 167356 ||||| |||| | |||||||||||| | ||||| || || || || || ||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 167357 GGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACG 167416 || ||| | || || || |||||| | ||| | ||||| ||| | ||||| || || Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 167417 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTT 167476 || ||||| |||||||| || || || || || |||| | || ||| ||| || Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 | || ||||| || || || |||||| || ||||| ||| |||||||| | ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 ||||| || |||| || ||||||| | ||||| || ||||| || | ||||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 167597 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGT 167656 || || | ||||| || |||| | | || || || |||||||| || ||||| || | Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 167657 AGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT 167716 | |||| | ||||| ||||| || |||||||| || | || |||||||| || Sbjct 175233 CGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTC 175174 Query 167717 GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTT 167776 || || || || || || || || | || || || |||||||||||||||| | |||| Sbjct 175173 GTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACC-TAGTTT 175115 Query 167777 -GGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 ||||| || || || || | ||| | ||||| | || |||||||| |||||||| || Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| ||||| |||||||| ||||||||| | |||| | ||| || | | ||| || Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 || |||| ||| || || || || | | ||||| ||||| || ||||| ||| Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 ||||| | | || |||| || ||||| || || ||||| ||||||||||| ||||| Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| || ||| |||||||| || || |||||| | |||||||| ||| | || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 ||||| || | || ||||||| ||| |||||||| | | ||| | || || || | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 |||||||| ||||| || || || || || | || || || || || || || ||||| Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 ||||| || |||||||| || || || ||||| | ||||| ||||||||| | ||| Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTG 168315 ||||||||| ||| || |||||||| ||||||||||| ||| | || |||||||| | Sbjct 174634 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATA 174575 Query 168316 ATATA 168320 ||||| Sbjct 174574 ATATA 174570 Score = 268 bits (296), Expect = 1e-66 Identities = 224/272 (82%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 166760 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGC 166819 |||||||||| ||||| || ||||||||||||||||| |||||||||||||| || | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 166820 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCA 166879 |||||||| | || || ||||| || ||||||| ||||| |||||| | ||| ||| || Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCA 48961 Query 166880 CC-ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 166938 | |||||||||||| | |||||||||||||||||||| || | | || || ||| Sbjct 48960 ACTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGT 48901 Query 166939 CGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATG 166998 ||||| || |||||||||||||| || ||||||||||| | ||||||||||||||| Sbjct 48900 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 48841 Query 166999 CACGAGCGTAATGCTCACAACTTCCCTCTGGA 167030 ||||||||||| ||||||||||||||||| || Sbjct 48840 CACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 268 bits (296), Expect = 1e-66 Identities = 224/272 (82%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 166760 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGC 166819 |||||||||| ||||| || ||||||||||||||||| |||||||||||||| || | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 166820 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGC- 166878 |||||||| | || || ||||| || ||||||| ||||| |||||| | ||| ||| | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCA 145242 Query 166879 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 166938 || |||||||||||| | |||||||||||||||||||| || | | || || ||| Sbjct 145243 ACTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGT 145302 Query 166939 CGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATG 166998 ||||| || |||||||||||||| || ||||||||||| | ||||||||||||||| Sbjct 145303 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 145362 Query 166999 CACGAGCGTAATGCTCACAACTTCCCTCTGGA 167030 ||||||||||| ||||||||||||||||| || Sbjct 145363 CACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 192 bits (212), Expect = 7e-44 Identities = 178/226 (79%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595 ||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 51123 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 51064 Query 166596 CCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAG 166655 ||| ||| | ||||| || |||||||||||||| ||| | ||||| || |||||||| Sbjct 51063 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 51004 Query 166656 TCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTA 166715 | | |||||||| || | ||||||| || ||||||| || || ||| | ||||| Sbjct 51003 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 50944 Query 166716 CAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCAT 166761 | || |||||||||||||| || |||||||| || ||||||||| Sbjct 50943 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 192 bits (212), Expect = 7e-44 Identities = 178/226 (79%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595 ||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 143080 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 143139 Query 166596 CCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAG 166655 ||| ||| | ||||| || |||||||||||||| ||| | ||||| || |||||||| Sbjct 143140 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 143199 Query 166656 TCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTA 166715 | | |||||||| || | ||||||| || ||||||| || || ||| | ||||| Sbjct 143200 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 143259 Query 166716 CAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCAT 166761 | || |||||||||||||| || |||||||| || ||||||||| Sbjct 143260 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 166186 GATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGT 166245 ||||| |||||||| || || |||| ||||| | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 166246 GCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCA 166305 ||||| |||| | || |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 166306 TCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTC 166365 || || || || ||| | || ||||||||||||| ||| || | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 166366 ATCGGCATCTATGCCTACATGGGT 166389 | || | || |||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 166186 GATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGT 166245 ||||| |||||||| || || |||| ||||| | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 166246 GCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCA 166305 ||||| |||| | || |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 166306 TCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTC 166365 || || || || ||| | || ||||||||||||| ||| || | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 166366 ATCGGCATCTATGCCTACATGGGT 166389 | || | || |||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 166390 CGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCT 166449 ||||| |||||||| |||| ||| | ||||||||||| ||||| ||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 166450 GCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 166509 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 166510 TCTGACGCAATGCC 166523 ||||||| ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 166390 CGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCT 166449 ||||| |||||||| |||| ||| | ||||||||||| ||||| ||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 166450 GCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 166509 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 166510 TCTGACGCAATGCC 166523 ||||||| ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567220953156800