Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1542 188 1e-42 seq1521 109 1e-18 seq1556 107 4e-18 seq1514 98.7 2e-15 seq1546 87.8 4e-12 >seq1542 Length=2112382 Score = 188 bits (208), Expect = 1e-42 Identities = 647/996 (65%), Gaps = 22/996 (2%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| || |||||||| || || |||| ||||||||||| ||| Sbjct 774256 GGCGAGGAGCTGTGCAACTGCGAGTTCTCGCTGGCGTACGGTGCCAAGATTCTGCTCAAC 774197 Query 279405 TCTAC-CCGC-CTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAG 279462 || |||| || | | ||||||||| ||| || || || ||| ||||| || | Sbjct 774196 A--ACGCCGCGCTGCGCCTGAAGCGTGGCCGCCGCTACGGCCTGTGCGGCCCCAACGGCG 774139 Query 279463 CGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACG 279522 ||| ||| ||| || |||||||||||||| ||||| ||| |||| || || || | Sbjct 774138 TGGGCAAGTCCACGCTGATGCGCGCCATTGCCAACGGCCAGGTGGACGGCTTCCCGCCCA 774079 Query 279523 CATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGA-TAGC 279581 | | | | || ||||| || ||||||||||||||| ||| || ||||| | Sbjct 774078 AGGACGTGCTGCGCACCGTGTACGTGGAGCACGACATCGACGGCTCGCTGTCGGACCTGA 774019 Query 279582 ACT-----GTGTTCGACTTC-CTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCT 279635 ||| | ||||| |||| | ||| || |||| | | || | | Sbjct 774018 ACTGCGTGGAGTTCGTCTTCGCCGACG-AGAACCTGCAGGCCGCCGTGAACACCACCAAG 773960 Query 279636 GAGGAAATCATCCAG-AAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCC 279694 ||| | | | |||| | || | || || || || ||| || | | Sbjct 773959 GAGCAGGTGA-CCAGCATGCTCTCGTCCGTCGGCTTCACCGAGGAGCTGCTGAACAAGGC 773901 Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 || || || ||||| || || ||||||||||||||||| || | ||| |||| || | Sbjct 773900 CGTGGGCTCGCTGTCCGGCGGCTGGAAGATGAAGCTGGCGCTGGCCCGCACCATGCTGAT 773841 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 | |||| || | || || || ||||| |||||||| ||||| |||||| Sbjct 773840 GAAGCCCGACATCATGCTCCTGGACGAGCCCACCAACCATCTGGACGTGCACAACGTCAA 773781 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| | | |||||| | ||| | | || || ||| ||||||| || ||||| Sbjct 773780 GTGGCTGGAGGACTACCTGGTGGGCCTGGACGAGGTGTCCTCCATCATTGTGTCGCACGA 773721 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA-AATCTGAAGC 279933 ||| |||||||| || ||||||| | |||||| |||| ||| || | |||| Sbjct 773720 CTCCGGCTTCCTGGACCACGTGTGCACGCACATCATCGACTA----CAACAACCGCAAGC 773665 Query 279934 TCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCT 279993 | | | ||| |||||||| || ||||||| || || ||||| |||| Sbjct 773664 TGCGCGTGTACAAGGGCAACCTCTCGAAGTTCGTGGAGCAGAAGCCCGAGGCCAAGGCCT 773605 Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 |||| || |||| | | ||||| | | | | || ||||| || | ||||||| Sbjct 773604 ACTACGAGCTGACTGCCTCCACCCTGACCTTCAAGCTGCCCGAGCCCGGCTACCTGGAGG 773545 Query 280054 GCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCA 280113 | ||| | ||||| || ||| ||||| | |||| |||| || |||| Sbjct 773544 GTGTCAAGACCAAGGACAAGGCCATCCTGAAGGCCGACCGCGTGTCCTACAAGTACCCCA 773485 Query 280114 A---TGGCCCCAACATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTG 280170 | | || || |||||| | | || | | | | || || || | | Sbjct 773484 ACACCGACCGCATGATCTTCGAGGGCGCCACCGCCTACTGCACCCTGTCGTCGCGCGTGG 773425 Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230 |||||| ||||| || || || ||||| ||||| ||||| || ||||| |||||| Sbjct 773424 CCTGCATTGGCCCCAACGGCGCCGGCAAGTCGACCCTGATCAAGGTGCTGACCGGCGAGG 773365 Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || || | || |||| |||||||| |||||| |||| || || ||||| || | Sbjct 773364 TGGAGCCCGTGGCCGGCACCGTGTGGAAGCACCCCAACCTGCGCATCGCCTACGTGGCGC 773305 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACA 280326 ||||||| ||||||||| | ||||| |||||||||| Sbjct 773304 AGCACGCCTTCCACCACCTGGAGAAGCACCTGGACA 773269 Score = 111 bits (122), Expect = 3e-19 Identities = 308/460 (67%), Gaps = 28/460 (6%) Strand=Plus/Minus Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCA 280771 ||| ||||| || || || ||||||||||| || | || | | || || ||||| Sbjct 772453 CATCCGCGGCCTGTCGGGCGGCCAGAAGGTGAAGGTCGTGCTGGCTGCCGCCACCTGGCA 772394 Query 280772 ACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGG 280831 |||| ||| ||||||| || |||||||| |||||||| ||||||||||| ||||| Sbjct 772393 GAACCCCCACCTGATCGTGCTGGACGAGCCCACCAACTACCTGGACCGCGACTCGCTGGG 772334 Query 280832 CGCTCTGAGTGCTGC--TC-TGGACACATTTGGCGGCGGCGTCGTAGTCATTTCTCACAG 280888 ||||||| | || || |||| || ||||||||| |||| ||||| |||||| Sbjct 772333 CGCTCTGGCCGGCGCCATCAAGGAC---TTCGGCGGCGGCATCGTCGTCATCTCTCACCA 772277 Query 280889 CACAGAATTTGTCAAGTCTG---TGTGCTCCGAGATGTGGACAGTGGGGGGAGGCAAGGT 280945 || || || || ||| | ||||| ||| ||||| ||||| || |||||| | Sbjct 772276 CAACGAGTTCGT---GTCCGCGCTGTGCAATGAGCGGTGGATCGTGGGCGGCGGCAAGAT 772220 Query 280946 TGACATCACAGGT--CAGTCTGCAGCCACCCTAGAGGCGGCCAAGATCGAGCTCAAGCGG 281003 | | ||| || ||| | || | ||| | ||| | ||| |||||| | Sbjct 772219 GGTGCGCGAGGGTGACAACCTG--ATCGCCATTAAGGAG---AAGGTGGAGATCAAGCAG 772165 Query 281004 GAGACCGAGTACACTGATGCTCTTGGTAACACCCACAAGGTAAAGGAAGAGAAGCGGGAG 281063 || ||| | ||| || | || |||||| |||||| |||| ||| |||| Sbjct 772164 CAGGATGAGGTGATTGACGCCTTCGGCAACACCATCAAGGTGAAGGGCCCCAAGAAGGAG 772105 Query 281064 CTGA-CTCG-TCAAGAAAAGAAGCAACGCGCT----AAGTCACGGAAGATGCGGAAGGCG 281117 || ||| |||| ||||| || ||||| ||| || ||| ||| |||| | Sbjct 772104 AAGATGTCGAACAAG--GAGAAG-AAGGCGCTGGAGAAGCTGCGCAAGGCGCGCAAGGAG 772048 Query 281118 CGTGGCGAGGAGGTGTCTGACAGCGAGGATGAGTACTAAA 281157 |||||||||| ||| | ||| |||||| |||| ||||| Sbjct 772047 CGTGGCGAGGTCGTGACCGACTCCGAGGAGGAGTGCTAAA 772008 >seq1521 Length=1102575 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 723277 AGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 723336 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 723337 CCCCACATTGGGC 723349 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 724471 AGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 724530 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 724531 CCCCACATTGGGC 724543 >seq1556 Length=6494944 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1728989 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1729048 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 1729049 CCCACATTGGGC 1729060 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1730806 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1730747 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 1730746 CCCACATTGGGC 1730735 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4645551 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4645492 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 4645491 CCCACATTGGGC 4645480 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4648831 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4648890 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 4648891 CCCACATTGGGC 4648902 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4814064 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4814123 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 4814124 CCCACATTGGGC 4814135 Score = 100 bits (110), Expect = 6e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 ||||||||||||||||||||||||| || ||||||| || ||||||||| |||||||||| Sbjct 4721712 CCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGAGTTCGAGCCC 4721653 Query 142566 CACATCGGGC 142575 ||||| |||| Sbjct 4721652 CACATTGGGC 4721643 >seq1514 Length=873095 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 14/220 (6%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 |||||||| |||||||| || ||| ||| ||||| || || || ||||||||| Sbjct 793956 GGTCTGGAGCCCGAGTTCGGCACGCACAGCGCCATCCGCGGCCTGTCGGGCGGCCAGAAG 793897 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| || || | | || || ||||||| ||| ||| || | || || |||||| Sbjct 793896 GTCAAGCTGGTGCTGGCGGCCGCCATGTGGCACTGCCCGCACCTGCTGGTGCTGGACGAG 793837 Query 280800 CCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACA-CA-- 280856 || |||||||| || |||||||| |||||||| ||| |||| || || || Sbjct 793836 CCCACCAACTACCTCGACCGCGACTCGCTGGGCGCGCTG------GCTCAGGCCATCAAG 793783 Query 280857 ---TTTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACAG 280893 |||||||||||||| || | | |||| || ||||| Sbjct 793782 GAGTTTGGCGGCGGCGTGGTGATGA--TCTCGCACCACAG 793745 >seq1546 Length=2252224 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| ||||||||||| ||||||| ||||||||| | ||||| ||||| | || Sbjct 2099855 GTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 2099914 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| | ||| || || || ||||| | | ||||| || Sbjct 2099915 GCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGGAGAAGAAAATGCCCTCCACGGC 2099974 Query 251964 CACCCATGCAACAAGGCGCTC 251984 | | | || || |||||||| Sbjct 2099975 CGCGAAGGCCACCAGGCGCTC 2099995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027816282450278