Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1501 295 1e-74 seq1546 149 1e-30 >seq1501 Length=566706 Score = 295 bits (326), Expect = 1e-74 Identities = 570/836 (68%), Gaps = 19/836 (2%) Strand=Plus/Minus Query 243766 CTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCAT 243825 |||||| | |||||||||||||||||||||||| || || |||||||| || ||||| Sbjct 386093 CTTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAG 386034 Query 243826 GGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGA 243885 | |||||||| | ||| |||||| | | ||| ||||| | Sbjct 386033 CGAGGTCAGCTTGCCAAAGTTG------GGGTCGGGCATGAACAC------GTTGAAGCT 385986 Query 243886 CTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAG-GTCCTTCTGA 243943 |||||||||||| | | ||| |||| || || ||||||||| | || || | ||| Sbjct 385985 CTGGCTCTGGTCAATGTAGG-CGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCG-CTGC 385928 Query 243944 GATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTC 244003 ||||| || |||||||||| | |||||| | |||||||| | || | | | Sbjct 385927 TTGATCTCCCACACCGTCTTGTACAGCCCCTTGAGCTCCTCGGGGATC---TCCAGCTCC 385871 Query 244004 TGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAG 244063 |||| ||||| || | | |||| | | || || || ||| | ||||| | Sbjct 385870 AGCACGGAGCCGTTCGCCGCCACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATG 385811 Query 244064 CGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGG 244123 || | ||| | | | ||||||| ||| ||||| ||||| || |||||||||||| Sbjct 385810 CGGTTCAGGTCGTGCAGCAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGG 385751 Query 244124 CGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCC 244183 ||| ||||| ||| | || ||||| | || ||| |||||||||| ||||||| Sbjct 385750 CGCACGTAGATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAG 385691 Query 244184 GTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG 244243 ||| || || |||||||| | ||||||||| ||| | |||||||||| | |||| Sbjct 385690 GTGGAGGCGGTGGGCATGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTGCGCGATG 385631 Query 244244 CGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCAC 244303 ||| | ||||| | ||||| || ||| | | | | | |||| ||||||| Sbjct 385630 CGGTTGCGCAGCTCCTCCCAGTTGCAGCGGCCGTCAACGCCGGTGGGCTTGACGCCCCAC 385571 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| |||||| | |||| || || ||| |||||||| |||||| ||| Sbjct 385570 ATGTCGGGCTGCAGGACGCCCTGCGACACTGGCGAGCCGGCGTAGGTCTCGTAGGGGCCG 385511 Query 244364 TCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC 244423 || |||| ||||||| || | ||| || |||| ||||| | |||||||||| Sbjct 385510 TCACGCTCCGCCAGCTCGCACGAGGTGCTGAGCGCAGCGTGGTAGACGACCTCGAAGATC 385451 Query 244424 ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACG 244483 ||||| ||| ||||| | || ||||| ||||||| || |||||| | Sbjct 385450 TGGCGGTTCAGCTCGGCGGCCTCGGGCGAGTCGAAGGCCATGCCCAGCAGGATGAAGGTG 385391 Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT 244543 || ||||| ||||||||||| | ||||||||| | ||| ||| ||||||||||| || Sbjct 385390 TCCGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGGCGCATGTTGGAGCGCTGCGCC 385331 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 | ||| ||||| ||||| |||| || | |||||| ||||||||||| | ||| Sbjct 385330 TTGGGGTGCGGGTAGTAGTTGACGTCAATGATCTTGTTCAGGTTGCGGGTCACCAT 385275 Score = 131 bits (144), Expect = 3e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||| |||||||||||||| ||| | | ||| ||||| | || | | ||| || Sbjct 384384 CTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTC 384325 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||| |||||| | ||| |||| |||||||| |||||| |||||||||||||||| Sbjct 384324 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAT 384265 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 ||||| |||| |||||| |||||| ||| ||||||||||| Sbjct 384264 GTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 384220 Score = 125 bits (138), Expect = 1e-23 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| || |||||| ||||| ||||| |||||||||||||||||||| ||| | Sbjct 384937 TGGTGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCT 384878 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 | ||||||||| ||||||| ||||||||| |||||| |||| |||||||| | || Sbjct 384877 GGTTGGACTTGCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCT 384818 Query 244839 GGGCGACGAGGA 244850 |||| | |||| Sbjct 384817 GGGCCTCCAGGA 384806 >seq1546 Length=2252224 Score = 149 bits (164), Expect = 1e-30 Identities = 134/166 (81%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | ||||| ||||| | ||||| |||||||| |||||||| ||| | ||| |||| Sbjct 2099995 GAGCGCCTGGTGGCCTTCGCGGCCGTGGAGGGCATTTTCTTCTCCGGCTCGTTCTGCTCC 2099936 Query 42759 ATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || |||||||| ||||||||||| ||||| ||||| Sbjct 2099935 ATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCAT 2099877 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||| | |||||||| ||||| | ||||| |||||| | |||||| Sbjct 2099876 CAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTC 2099831 Score = 140 bits (154), Expect = 6e-28 Identities = 204/282 (72%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 ||||| ||| ||||||| | ||||| | || || ||| | | ||||||||||| Sbjct 1079384 GAGCGCAACCAGCTGTTCGACGCCATCCACACCATCCCCACCGTGGCTAAGAAGGCGGAG 1079443 Query 42657 TGGGCGCTCAACTGGATCGAGAGTC-CCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| | ||||||| || | || ||| ||||| ||| | ||||| | ||| Sbjct 1079444 TGGGCCATGCGCTGGATC-AGCTCCTCCAACGT---GTTCGCGGAGCGCCTGGTGGGCTT 1079499 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 || ||| ||||||||| |||||| ||| ||||| ||||||||||||| | ||| | Sbjct 1079500 CGCCTGCGTGGAGGGCATCCACTTCTCCGGCTCCTTCTGCTCCATCTTCTGGTTGAAGAA 1079559 Query 42776 GAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | | || | |||||| || || ||||||| |||| ||||||||| |||||||||| | Sbjct 1079560 G-CGCTGCCTGATGCCGGGGCTGTCCTTCTCCAACGTGCTCATCAGCCGGGACGAGGGCC 1079618 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 |||| | ||||| || ||| ||||| |||| ||||||| Sbjct 1079619 TGCACTGCGACTTCGCGTGCTGCCTGTACTCG---CACCTCA 1079657 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| |||| || | ||||| |||||||||||| |||||||| || | ||||||||| Sbjct 1078897 TTCATCAAGTACGTGCTGGCATTCTTCGCCGCCAGCGACGGCATTGTGATGGAGAACCTG 1078956 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 || | | ||||||| || | ||| ||||||||| |||||||||||||||| Sbjct 1078957 GCGGCGCGCTTCATGAGCGACATCCAGGTGCCGGAGGCGCGCGCCTTCTACGGCTTCCAG 1079016 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 || ||||| |||||||||||| ||| ||||| Sbjct 1079017 ATCGCCATGGAGAACGTGCACAGCGAGATGTAC 1079049 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 42512 CTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCT 42571 |||||||||||||||| | ||||| |||||| | ||| ||| ||||| | ||||| Sbjct 2100343 CTTCTACGGCTTCCAGGTGGCCATCGAGAACATCCACAGCGAGATGTACTCGCTGCTGCT 2100284 Query 42572 CAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGAT 42631 | | |||||| ||| ||| ||| || ||||||| | |||| ||||| | Sbjct 2100283 GGAGAGCTACATCAAGGACCCCCAGGAGAAGCACAAGCTGTTCCACTCCATCGAGACCGT 2100224 Query 42632 GCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCG 42675 |||||||||||||||||||||| | ||||| | || ||||||| Sbjct 2100223 GCCCTGCATCAAGAAGAAGGCGCAGTGGGCCATGAAGTGGATCG 2100180 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/201 (72%), Gaps = 12/201 (6%) Strand=Plus/Minus Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC 42968 |||||| |||||| |||||||| ||| |||||||| |||| || ||||||| ||| | Sbjct 2099582 ATCATCGTGGAGGCGGTGGAGATTGAGCAGGAGTTCTGCACGGAGGCGCTGCCGGTGGAC 2099523 Query 42969 CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTC 43028 ||| ||||||||||| | ||| ||| |||||||||||| || || |||| || Sbjct 2099522 CTGATCGGCATGAACAGCCGCCTGATGGCGCAGTACATCCAGTTTGTGGCGGACCGCCTG 2099463 Query 43029 CT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG-----CCCCTTCGACTTT 43082 || ||| | | |||| | || || ||| || |||| ||||||||| || Sbjct 2099462 CTGGTGTC-GCTGGG---CTGC--GCTAAGCAATACAACGTGGTCAACCCCTTCGAGTTC 2099409 Query 43083 ATGGAGAACATCTCGTTGGAG 43103 ||||||| |||||| || || Sbjct 2099408 ATGGAGATGATCTCGCTGCAG 2099388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944320808994080