Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1542 118 2e-21 seq1505 86.0 1e-11 >seq1542 Length=2112382 Score = 118 bits (130), Expect = 2e-21 Identities = 256/381 (67%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 333670 ||||| |||||| |||||| | ||| |||||| ||| | ||||||||||| | ||| Sbjct 773513 CTTCAGGATGGCCTTGTCCTTGGTCTTGACACCCTCCAGGTAGCCGGGCTCGGGCAGCTT 773572 Query 333671 CCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCAC 333730 | || | | | || || ||||||| | | ||||| || || ||| Sbjct 773573 GAAGGTCAGGGTGGAGGCAGTCAGCTCGTAGTAGGCCTTGGCCTCGGGCTTCTGCTCCAC 773632 Query 333731 GAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAAT 333790 ||||| || || || ||||||||| |||||| |||| ||| ||| | ||| || Sbjct 773633 GAACTTCGAGAGGTTGCCCTTGTACACGCGCAGCTTGCGGTT--GTT-GTAGTCGATGAT 773689 Query 333791 AGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTC 333850 ||||| || ||| ||||| ||||||||||| |||||||| | | | || || || Sbjct 773690 GTGCGTGCACACGTGGTCCAGGAAGCCGGAGTCGTGCGACACAATGATGGAGGACACCTC 773749 Query 333851 CTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGT 333910 | ||| | |||||| || ||||||| | ||||| ||| ||||||||||| Sbjct 773750 GTCCAGGCCCACCAGGTAGTCCTCCAGCCACTTGACGTTGTGCACGTCCAGATGGTTGGT 773809 Query 333911 CGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTT 333970 |||||||| || || | | | | |||| ||||| | || || || || || || Sbjct 773810 GGGCTCGTCCAGGAGCATGATGTCGGGCTTCATCAGCATGGTGCGGGCCAGCGCCAGCTT 773869 Query 333971 CATTTTCCACCCTCCTGAAAG 333991 ||| ||||| || || || || Sbjct 773870 CATCTTCCAGCCGCCGGACAG 773890 Score = 114 bits (126), Expect = 3e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 334131 GACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCT 334190 || ||||||| ||||| |||||||| | || || || ||| | ||||| || Sbjct 774033 GAGCCGTCGATGTCGTGCTCCACGTACACGGTGCGCAGCACGTCCTTGGGCGGGAAGCCG 774092 Query 334191 TCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCA 334250 || | ||| ||||| |||| ||||||||||| || || || ||| | ||||| || || Sbjct 774093 TCCACCTGGCCGTTGGCAATGGCGCGCATCAGCGTGGACTTGCCCACGCCGTTGGGGCCG 774152 Query 334251 CACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGC-GTATTGTTCAGAAGAATTTT 334309 ||||| ||||||||| ||||||||||| | | ||| | ||||| || ||||| || Sbjct 774153 CACAGGCCGTAGCGGCGGCCACGCTTCAG-GCGCAGCGCGGCGTTGTTGAGCAGAATCTT 774211 Query 334310 TCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||| || ||||| || || || || | ||||| ||||| || Sbjct 774212 GGCACCGTACGCCAGCGAGAACTCGCAGTTGCACAGCTCCTCGCC 774256 >seq1505 Length=619805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 ||||| ||||||||||||| | || ||| || || || || || ||||| || Sbjct 186446 ACGATGGGCGTGATGAACTCCAGCAGGAAGCCGGGGATGCGCAGCAGCGAGGGGAAGAAG 186505 Query 298145 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 298204 || || | |||||||||| ||| || ||||| | ||||| |||| ||| ||| Sbjct 186506 CTGTGCAGGAAGTTCATGATGAGGCCCTTGATGTGCGAGCCGTCGTGATCCTGGTCCGTC 186565 Query 298205 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACAC 298251 |||||||||| || ||||| || ||||| | ||||| | |||||| Sbjct 186566 ATGATCATCAGGTGGCCGTACCGCAGCGACGTCGTGTTCTCGTACAC 186612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102857984447300