Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1501 116 4e-21 seq1546 98.7 1e-15 seq736 93.3 5e-14 seq1525 87.8 2e-12 >seq1501 Length=566706 Score = 116 bits (128), Expect = 4e-21 Identities = 285/426 (67%), Gaps = 7/426 (2%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || |||||||| |||| |||||| || | |||| ||||| | Sbjct 386086 CGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAGGTC 386027 Query 113657 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | |||| | ||||| | |||||| | ||| | || ||| || || ||| | Sbjct 386026 AGCTTGCCAAA-GTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCAATGTA 385968 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCA-CATCCTTCATCTTGATTTCCCACACAGTTC 113774 | || || || || ||||| || | || | | | | |||||| |||||||| || Sbjct 385967 GGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCG-CTGCTTGATCTCCCACACCGTCT 385909 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 |||| || ||| | || || ||||| |||| | | | |||||| |||| Sbjct 385908 TGTACAGCCCCTTGAGCTCCTCGGGGATCTCCAGC---TCCAGCACGGAGCCGTTCGCCG 385852 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 |||| | ||||| || ||||||| || || || || || | || | Sbjct 385851 CCACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTCAGGTCGTGCAGCA 385792 Query 113895 GATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCG 113954 | |||| ||||| || ||||| || | || ||| | || ||||| || | | Sbjct 385791 GGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGAGG 385732 Query 113955 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGG 114014 |||| |||||||||||||| ||||| |||| ||| || | ||||||||| |||||||||| Sbjct 385731 TGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCATGG 385672 Query 114015 GTGCCA 114020 |||||| Sbjct 385671 GTGCCA 385666 >seq1546 Length=2252224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| ||| |||||| | || |||||| |||| || ||||| || | Sbjct 1079623 GTGCAGGCCCTCGTCCCGGCTGATGAGCACGTTGGAGAAGGACAGCCCCGGCATCAGGCA 1079564 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||||||||||||||| || | || || || || |||||| ||| |||||||| || Sbjct 1079563 GCGCTTCTTCAACCAGAAGATGGAGCAGAAGGAGCCGGAGAAGTGGATGCCCTCCACGCA 1079504 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| | | || ||||| || || Sbjct 1079503 GGCGAAGCCCACCAGGCGCTCCGCGAA 1079477 >seq736 Length=4093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| |||||||| | | || || ||| || || ||| ||||| || ||| Sbjct 3673 CGGTCAAATCGACCTGGTCTCAACAGTGCTGGGTCGAGAATTTCAGGCCGGTTGGTGGCC 3732 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || |||| | || |||| | | |||||||||||||||||||| || | ||| || Sbjct 3733 GCCATGATGATGACGCCCTTGTTAGTATCAAAGCCATCCATCTCAACCAGTAATTGGTTC 3792 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACC---CGCACTGCGTTGCTTACCG 10963 | ||| |||||||||||||| || ||| || | || |||| | || ||| || Sbjct 3793 AGGGTCTGTTCGCGTTCATCGTTACCGGTCACTGCTCCGAGGGCAC-GAGT--CTTGCCC 3849 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGT 10999 | ||||| | ||| |||||||| | ||| |||||| Sbjct 3850 AGCGCGTCCAGTTCGTCGATGAAGATGATGCACGGT 3885 >seq1525 Length=1279724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || ||||| || |||||| ||| || || ||| |||||| || || Sbjct 79700 CGGTCGAAGCGGCCGGGGCGCAGCAGGGCGGGGTCCAGAATGTCAGCGCGGTTGGTGGCG 79641 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | |||||| || | | || ||||||||||||||||||| | || || Sbjct 79640 GCGATGACGATGATGCCGGTGTTGCCCTCGAAGCCATCCATCTCAGTCAGCATCTGGTTC 79581 Query 10907 ATGGTTTGTTCGCGTTCATCATT 10929 | || || ||||| || || || Sbjct 79580 AGAGTCTGCTCGCGCTCGTCGTT 79558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341966538640