Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1491 87.8 2e-12 seq1535 84.2 2e-11 >seq1491 Length=442363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||||| || || || |||||||| || || Sbjct 109832 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 109773 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 109772 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 109713 Query 64337 ATTCCT 64342 || ||| Sbjct 109712 ATGCCT 109707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||||| || || || |||||||| || || Sbjct 110215 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 110156 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 110155 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 110096 Query 64337 ATTCCT 64342 || ||| Sbjct 110095 ATGCCT 110090 >seq1535 Length=1731330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || || | |||||| |||| Sbjct 1340479 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1340538 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| || |||| || ||||||||||| || ||||| ||| Sbjct 1340539 TCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCT 1340589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635069417520