Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1501 185 9e-42 >seq1501 Length=566706 Score = 185 bits (204), Expect = 9e-42 Identities = 310/454 (68%), Gaps = 3/454 (1%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| ||| ||| ||||||| ||||| ||||||||||| |||||||| |||||||| Sbjct 385641 CACGGCGTGCGCAACTCGCTGCTGGTGGCACCCATGCCCACCGCCTCCACCTCGCAGATC 385700 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| || || |||| |||||| ||| | ||| | || ||||| Sbjct 385701 CTGGGCAACAACGAGTGCTTTGAGCCCTACACCTCGAACATCTACGTGCGCCGCGTGCTG 385760 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 |||| || ||| |||| ||||| ||||||| || | ||||||| |||| | Sbjct 385761 TCCGGCGAGTTCACCGTGGTCAACCAGCACCTGCTGCACGACCTGAACCGCATGGGCATC 385820 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| | | | | |||||| | ||| | || ||||||||||| | | | | | Sbjct 385821 TGGTCCGCCGACCTGAAGAACGAGCTGGTGGCGGCGAACGGCTCCGTGCTGGA---GCTG 385877 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 | || || ||||| |||||| ||| |||||||| |||||||||||| ||||||| | Sbjct 385878 GAGATCCCCGAGGAGCTCAAGGGGCTGTACAAGACGGTGTGGGAGATCAAGCAGCGCACG 385937 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | | ||| || |||| |||||| ||| ||| |||||| Sbjct 385938 CTGGTGGACATGGCCGCCGACCGCGGCGCCTACATTGACCAGAGCCAGAGCTTCAACGTG 385997 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 ||| |||| |||| || || | || || || ||||||| ||| | ||| Sbjct 385998 TTCATGCCCGACCCCAACTTTGGCAAGCTGACCTCGCTGCACTTCTACGCCTGGCGCAAG 386057 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCA 95530 || ||||||||||| ||||| || |||| |||| Sbjct 386058 GGCCTCAAGACCGGCATGTACTACCTGCGCACCA 386091 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 94142 GCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCT 94201 |||| ||||||||||| || || | | | ||||| | ||||| |||| | ||||||| Sbjct 384215 GCTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATGGAGCCCT 384274 Query 94202 GGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA 94261 ||||||| |||||| | ||| | |||||||| |||||||||||||| || || | Sbjct 384275 GGCACGCCGACGTGTTTGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGC 384334 Query 94262 GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 | ||| | ||||| ||||||| || ||| | || ||||| || ||| Sbjct 384335 GCGCCCGCGACCTGTTCTACGGCCTGTGGATCCCCGACCTGTTCATG 384381 Score = 107 bits (118), Expect = 2e-18 Identities = 113/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 94454 AGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCA 94513 |||||||| | ||| |||| | ||||||||||| || | |||||||| ||| || Sbjct 384791 AGCTGTGGTTTGCCATCCTGGAGGCCCAGGTGGAGACCGGCAACCCCTACATGCTGTACA 384850 Query 94514 AGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAAT 94572 |||| | ||| |||| |||||||||||||||| |||| || |||||| |||| || Sbjct 384851 AGGACCACTG-CAACCGCAAGTCCAACCAGCAGAACCTGGGCACCATCAAGTGCTCCAAC 384909 Query 94573 CTGTGCACCGAGATTGTCGAGTATAC 94598 |||||||| |||||| ||||||| || Sbjct 384910 CTGTGCACGGAGATTATCGAGTACAC 384935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713565265680