Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1501 120 3e-22 seq1546 98.7 1e-15 >seq1501 Length=566706 Score = 120 bits (132), Expect = 3e-22 Identities = 174/242 (72%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| | ||||| | ||| |||||| ||| || ||| ||||| || ||||| | Sbjct 384934 TGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGT 384875 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 153759 || ||||| ||||| ||| ||| | |||||||| || ||||||||| || || | Sbjct 384874 TGGACTTGCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTGGG 384815 Query 153760 TTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCC 153815 || | ||| ||||| ||| | |||||| |||||| ||| || | |||||||| Sbjct 384814 CCTCCAGGATGGCAAACCA---CAGCTGCTGCGCGCGCACCACGCGGC-GCGAGCGGCCC 384759 Query 153816 TCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCG 153875 || |||||| |||||| ||||||||||| || || |||||||||| |||||| Sbjct 384758 TCCTGCTCGTACTTGAGGTACAGGCGCTCAAACTCCTCACCCCAGCAGTCGGCCAGGCCG 384699 Query 153876 GG 153877 || Sbjct 384698 GG 384697 >seq1546 Length=2252224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/186 (74%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 ||||||||||| || || ||||||| | |||| ||||||||||| || ||| | || Sbjct 2099574 GGAGGCGGTGGAGATTGAGCAGGAGTTCTGCACGGAGGCGCTGCCGGTGGACCTGATCGG 2099515 Query 52673 CATGAACGCGCAGTC-CATGTGCG-AGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 ||||||| || | | ||| ||| |||||||| ||||||||||||| || ||| ||||| Sbjct 2099514 CATGAAC-AGCCGCCTGATG-GCGCAGTACATCCAGTTTGTGGCGGACCGCCTGCTGGTG 2099457 Query 52731 CAGCTCGGGCAGC-CAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 ||| |||| || | ||| | | ||||| ||| || || ||||| ||| | | || Sbjct 2099456 TCGCT-GGGCTGCGCTAAGCAATACAACGTGGTCAACCCCTTCGAGTTCATGGAGATGAT 2099398 Query 52790 TTCGCT 52795 ||||| Sbjct 2099397 CTCGCT 2099392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252735289760