Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1501 113 4e-20 >seq1501 Length=566706 Score = 113 bits (124), Expect = 4e-20 Identities = 308/463 (67%), Gaps = 19/463 (4%) Strand=Plus/Minus Query 145753 TTTGTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTAT- 145811 || |||||||| |||||||||||||||||||| || |||| | ||| ||||| | Sbjct 386092 TTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGC 386033 Query 145812 --GCTCGACATGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGAT-TGGCTCTG 145868 | || | || | ||| |||| |||| | |||| || | || | |||||||| Sbjct 386032 GAGGTCAGCTTGCCAAAGT---TGGGGTCGGGCATGAACACGTTGA-AGCTCTGGCTCTG 385977 Query 145869 ATCAATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCA---TGCACTTTGATTTAATTT 145924 |||||| | || ||| ||||||||||||||||| | || ||| || || || | Sbjct 385976 GTCAATGTA-GGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGC---TTGATCT 385921 Query 145925 CCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAG 145984 |||| | || || | || |||||| | || ||| || || | | | |||| | Sbjct 385920 CCCACACCGTCTTGTACAGCCCCTTGAGCTCCTCGGGGATCTCC---AGCTCCAGCACGG 385864 Query 145985 ACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGA 146044 | || || | |||| | | ||| || || | | | ||| || | | Sbjct 385863 AGCCGTTCGCCGCCACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTCA 385804 Query 146045 GGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGAT 146104 || | | | || | |||||||||||| |||||||||| || ||||| | || | Sbjct 385803 GGTCGTGCAGCAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGT 385744 Query 146105 ACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAG 146164 | | ||| |||| | ||||| || |||||||||| || || ||||||| || | | Sbjct 385743 AGATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGG 385684 Query 146165 CGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 |||| |||||| |||||||||| ||||| | ||||||||| Sbjct 385683 CGGTGGGCATGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTG 385641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491539621920